Result of FASTA (omim) for
pFN21AE9277
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9277, 204 aa
1>>>pF1KE9277 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6838+/-0.000362; mu= 16.3287+/- 0.022
mean_var=51.8317+/-10.345, 0's: 0 Z-trim(113.5): 13 B-trim: 471 in 2/52
Lambda= 0.178146
statistics sampled from 22845 (22856) to 22845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.268), width: 16
Scan time: 4.170
The best scores are: opt bits E(85289)
NP_068595 (OMIM: 609854) phosphopantothenoylcystei ( 204) 1374 360.6 9.9e-100
XP_016877954 (OMIM: 609854) PREDICTED: phosphopant ( 211) 1206 317.4 1e-86
NP_001288031 (OMIM: 609854) phosphopantothenoylcys ( 172) 874 232.1 4.1e-61
XP_016877951 (OMIM: 609854) PREDICTED: phosphopant ( 154) 707 189.1 3.1e-48
XP_016877950 (OMIM: 609854) PREDICTED: phosphopant ( 179) 706 188.9 4.3e-48
NP_001288030 (OMIM: 609854) phosphopantothenoylcys ( 161) 587 158.3 6.3e-39
NP_001288032 (OMIM: 609854) phosphopantothenoylcys ( 129) 585 157.7 7.5e-39
NP_001288033 (OMIM: 609854) phosphopantothenoylcys ( 81) 561 151.4 3.6e-37
NP_001288034 (OMIM: 609854) phosphopantothenoylcys ( 81) 561 151.4 3.6e-37
XP_016877953 (OMIM: 609854) PREDICTED: phosphopant ( 136) 417 114.6 7.8e-26
XP_016877952 (OMIM: 609854) PREDICTED: phosphopant ( 141) 416 114.3 9.5e-26
>>NP_068595 (OMIM: 609854) phosphopantothenoylcysteine d (204 aa)
initn: 1374 init1: 1374 opt: 1374 Z-score: 1911.5 bits: 360.6 E(85289): 9.9e-100
Smith-Waterman score: 1374; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_068 SPQDIPVTLYSDADEWEIWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
130 140 150 160 170 180
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
::::::::::::::::::::::::
NP_068 MAEVGTIVDKVKEVLFQHSGFQQS
190 200
>>XP_016877954 (OMIM: 609854) PREDICTED: phosphopantothe (211 aa)
initn: 1206 init1: 1206 opt: 1206 Z-score: 1677.9 bits: 317.4 E(85289): 1e-86
Smith-Waterman score: 1206; 97.8% identity (98.9% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
XP_016 SPQDIPVTLYSDADEWEIWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_016 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGWTA
130 140 150 160 170 180
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
.
XP_016 VVRSWLTYSLDFPGLRCSSHLSHQRSSQDHR
190 200 210
>>NP_001288031 (OMIM: 609854) phosphopantothenoylcystein (172 aa)
initn: 872 init1: 872 opt: 874 Z-score: 1218.1 bits: 232.1 E(85289): 4.1e-61
Smith-Waterman score: 1088; 83.8% identity (84.3% similar) in 204 aa overlap (1-204:1-172)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
:::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGI--------------
10 20 30 40
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
::::::::::::::::::::::::::::::::::::::::::
NP_001 ------------------WKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
50 60 70 80
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
90 100 110 120 130 140
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
::::::::::::::::::::::::
NP_001 MAEVGTIVDKVKEVLFQHSGFQQS
150 160 170
>>XP_016877951 (OMIM: 609854) PREDICTED: phosphopantothe (154 aa)
initn: 716 init1: 702 opt: 707 Z-score: 986.8 bits: 189.1 E(85289): 3.1e-48
Smith-Waterman score: 707; 93.5% identity (96.3% similar) in 108 aa overlap (76-181:17-124)
50 60 70 80 90 100
pF1KE9 LEVAVVTTERAKHFYSPQDIPVTLYSDADEW--EMWKSRSDPVLHIDLRRWADLLLVAPL
: ..:::::::::::::::::::::::::
XP_016 MASARQLSCRRERRLAWAGQIWKSRSDPVLHIDLRRWADLLLVAPL
10 20 30 40
110 120 130 140 150 160
pF1KE9 DANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVE
50 60 70 80 90 100
170 180 190 200
pF1KE9 IPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS
:::::::::::::: :.
XP_016 IPCVAKKLVCGDEGWTAVVRSWLTYSLDFPGLRCSSHLSHQRSSQDHR
110 120 130 140 150
>>XP_016877950 (OMIM: 609854) PREDICTED: phosphopantothe (179 aa)
initn: 980 init1: 702 opt: 706 Z-score: 984.5 bits: 188.9 E(85289): 4.3e-48
Smith-Waterman score: 920; 80.1% identity (81.2% similar) in 181 aa overlap (1-181:1-149)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
:::::::::::::::::::::::::::::::::::::::::::::.
XP_016 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGI--------------
10 20 30 40
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
::::::::::::::::::::::::::::::::::::::::::
XP_016 ------------------WKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
50 60 70 80
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_016 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGWTA
90 100 110 120 130 140
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
.
XP_016 VVRSWLTYSLDFPGLRCSSHLSHQRSSQDHR
150 160 170
>>NP_001288030 (OMIM: 609854) phosphopantothenoylcystein (161 aa)
initn: 1072 init1: 584 opt: 587 Z-score: 819.9 bits: 158.3 E(85289): 6.3e-39
Smith-Waterman score: 990; 78.9% identity (78.9% similar) in 204 aa overlap (1-204:1-161)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
:::::::::::::::::
NP_001 SPQDIPVTLYSDADEWE-------------------------------------------
70
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
80 90 100 110 120 130
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
::::::::::::::::::::::::
NP_001 MAEVGTIVDKVKEVLFQHSGFQQS
140 150 160
>>NP_001288032 (OMIM: 609854) phosphopantothenoylcystein (129 aa)
initn: 584 init1: 584 opt: 585 Z-score: 818.5 bits: 157.7 E(85289): 7.5e-39
Smith-Waterman score: 714; 63.2% identity (63.2% similar) in 204 aa overlap (1-204:1-129)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPG---------------
10 20 30 40
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
NP_001 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
50 60 70 80 90 100
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
::::::::::::::::::::::::
NP_001 MAEVGTIVDKVKEVLFQHSGFQQS
110 120
>>NP_001288033 (OMIM: 609854) phosphopantothenoylcystein (81 aa)
initn: 561 init1: 561 opt: 561 Z-score: 788.2 bits: 151.4 E(85289): 3.6e-37
Smith-Waterman score: 561; 100.0% identity (100.0% similar) in 81 aa overlap (124-204:1-81)
100 110 120 130 140 150
pF1KE9 WADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQV
::::::::::::::::::::::::::::::
NP_001 MRAWDRSKPLLFCPAMNTAMWEHPITAQQV
10 20 30
160 170 180 190 200
pF1KE9 DQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS
40 50 60 70 80
>>NP_001288034 (OMIM: 609854) phosphopantothenoylcystein (81 aa)
initn: 561 init1: 561 opt: 561 Z-score: 788.2 bits: 151.4 E(85289): 3.6e-37
Smith-Waterman score: 561; 100.0% identity (100.0% similar) in 81 aa overlap (124-204:1-81)
100 110 120 130 140 150
pF1KE9 WADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQV
::::::::::::::::::::::::::::::
NP_001 MRAWDRSKPLLFCPAMNTAMWEHPITAQQV
10 20 30
160 170 180 190 200
pF1KE9 DQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS
40 50 60 70 80
>>XP_016877953 (OMIM: 609854) PREDICTED: phosphopantothe (136 aa)
initn: 693 init1: 416 opt: 417 Z-score: 584.8 bits: 114.6 E(85289): 7.8e-26
Smith-Waterman score: 546; 56.9% identity (57.5% similar) in 181 aa overlap (1-181:1-106)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPG---------------
10 20 30 40
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
XP_016 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_016 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGWTA
50 60 70 80 90 100
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
.
XP_016 VVRSWLTYSLDFPGLRCSSHLSHQRSSQDHR
110 120 130
204 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:16:09 2016 done: Tue Nov 8 10:16:10 2016
Total Scan time: 4.170 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]