Result of FASTA (ccds) for
pFN21AE9277
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9277, 204 aa
1>>>pF1KE9277 204 - 204 aa - 204 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2055+/-0.000747; mu= 13.1821+/- 0.045
mean_var=53.3477+/-10.673, 0's: 0 Z-trim(107.0): 8 B-trim: 89 in 1/49
Lambda= 0.175597
statistics sampled from 9329 (9334) to 9329 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.287), width: 16
Scan time: 2.070
The best scores are: opt bits E(32554)
CCDS10275.1 PPCDC gene_id:60490|Hs108|chr15 ( 204) 1374 355.7 1.1e-98
CCDS73760.1 PPCDC gene_id:60490|Hs108|chr15 ( 172) 874 229.0 1.3e-60
CCDS73759.1 PPCDC gene_id:60490|Hs108|chr15 ( 161) 587 156.3 9.5e-39
CCDS73761.1 PPCDC gene_id:60490|Hs108|chr15 ( 129) 585 155.8 1.1e-38
CCDS76781.1 PPCDC gene_id:60490|Hs108|chr15 ( 81) 561 149.6 4.9e-37
>>CCDS10275.1 PPCDC gene_id:60490|Hs108|chr15 (204 aa)
initn: 1374 init1: 1374 opt: 1374 Z-score: 1885.0 bits: 355.7 E(32554): 1.1e-98
Smith-Waterman score: 1374; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS10 SPQDIPVTLYSDADEWEIWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
130 140 150 160 170 180
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
::::::::::::::::::::::::
CCDS10 MAEVGTIVDKVKEVLFQHSGFQQS
190 200
>>CCDS73760.1 PPCDC gene_id:60490|Hs108|chr15 (172 aa)
initn: 872 init1: 872 opt: 874 Z-score: 1201.6 bits: 229.0 E(32554): 1.3e-60
Smith-Waterman score: 1088; 83.8% identity (84.3% similar) in 204 aa overlap (1-204:1-172)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
:::::::::::::::::::::::::::::::::::::::::::::.
CCDS73 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGI--------------
10 20 30 40
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
::::::::::::::::::::::::::::::::::::::::::
CCDS73 ------------------WKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
50 60 70 80
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
90 100 110 120 130 140
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
::::::::::::::::::::::::
CCDS73 MAEVGTIVDKVKEVLFQHSGFQQS
150 160 170
>>CCDS73759.1 PPCDC gene_id:60490|Hs108|chr15 (161 aa)
initn: 1072 init1: 584 opt: 587 Z-score: 809.2 bits: 156.3 E(32554): 9.5e-39
Smith-Waterman score: 990; 78.9% identity (78.9% similar) in 204 aa overlap (1-204:1-161)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
:::::::::::::::::
CCDS73 SPQDIPVTLYSDADEWE-------------------------------------------
70
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
80 90 100 110 120 130
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
::::::::::::::::::::::::
CCDS73 MAEVGTIVDKVKEVLFQHSGFQQS
140 150 160
>>CCDS73761.1 PPCDC gene_id:60490|Hs108|chr15 (129 aa)
initn: 584 init1: 584 opt: 585 Z-score: 808.0 bits: 155.8 E(32554): 1.1e-38
Smith-Waterman score: 714; 63.2% identity (63.2% similar) in 204 aa overlap (1-204:1-129)
10 20 30 40 50 60
pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY
:::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPG---------------
10 20 30 40
70 80 90 100 110 120
pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL
CCDS73 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA
50 60 70 80 90 100
190 200
pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS
::::::::::::::::::::::::
CCDS73 MAEVGTIVDKVKEVLFQHSGFQQS
110 120
>>CCDS76781.1 PPCDC gene_id:60490|Hs108|chr15 (81 aa)
initn: 561 init1: 561 opt: 561 Z-score: 778.5 bits: 149.6 E(32554): 4.9e-37
Smith-Waterman score: 561; 100.0% identity (100.0% similar) in 81 aa overlap (124-204:1-81)
100 110 120 130 140 150
pF1KE9 WADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQV
::::::::::::::::::::::::::::::
CCDS76 MRAWDRSKPLLFCPAMNTAMWEHPITAQQV
10 20 30
160 170 180 190 200
pF1KE9 DQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS
40 50 60 70 80
204 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:16:08 2016 done: Tue Nov 8 10:16:09 2016
Total Scan time: 2.070 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]