FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9275, 268 aa
  1>>>pF1KE9275 268 - 268 aa - 268 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.8693+/-0.000919; mu= -11.3510+/- 0.056
 mean_var=380.9937+/-75.955, 0's: 0 Z-trim(117.9): 2  B-trim: 0 in 0/56
 Lambda= 0.065708
 statistics sampled from 18699 (18701) to 18699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.574), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS2626.1 EAF1 gene_id:85403|Hs108|chr3           ( 268) 1816 184.7 5.9e-47
CCDS3006.1 EAF2 gene_id:55840|Hs108|chr3           ( 260)  667 75.8 3.5e-14


>>CCDS2626.1 EAF1 gene_id:85403|Hs108|chr3                (268 aa)
 initn: 1816 init1: 1816 opt: 1816  Z-score: 956.5  bits: 184.7 E(32554): 5.9e-47
Smith-Waterman score: 1816; 99.3% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KE9 MNGTANPLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MNGTANPLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVTI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 TLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEFVLEKLSSSIQVKKTRAEGSSKIQ
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS26 TLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEYVLEKLSSSIQVKKTRAEGSSKIQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 ARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 ARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 VDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 VDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGT
              190       200       210       220       230       240

              250       260        
pF1KE9 SRPQGSNQLMNALRNDLQLSESGSDSDD
       :::::::::::.::::::::::::::::
CCDS26 SRPQGSNQLMNTLRNDLQLSESGSDSDD
              250       260        

>>CCDS3006.1 EAF2 gene_id:55840|Hs108|chr3                (260 aa)
 initn: 890 init1: 598 opt: 667  Z-score: 368.0  bits: 75.8 E(32554): 3.5e-14
Smith-Waterman score: 843; 54.5% identity (73.6% similar) in 277 aa overlap (1-268:1-260)

                10        20        30        40        50         
pF1KE9 MNGTAN-PLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVT
       ::..:.   :::.:. :.:::::::.:: .:::.:::::::::::: :: :.::.:..::
CCDS30 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE9 ITLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEFVLEKLSSSIQVKKTRAEGSSKI
       ::::.: :::::.:::::.:.:: :.:.:::::::::  ::::::.: :::::.::::::
CCDS30 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE9 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRA
       : : :::  .  ...               . :   : :: .:. ::   .:::.:::.:
CCDS30 QYRKEQQQQQMWNSA---------------RTPNLVKHSPSEDKMSPASPIDDIERELKA
              130                      140       150       160     

     180       190       200       210              220       230  
pF1KE9 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNS
       :.....:::: ..::.: : :::.:.:.::.:  ::       .:     .:.  : :  
CCDS30 EASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRI
         170       180       190       200       210       220     

            240        250       260        
pF1KE9 RPAVANGTSRPQ-GSNQLMNALRNDLQLSESGSDSDD
        : .  . .: . .:. :::.::::::::::::::::
CCDS30 -PDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD
           230       240       250       260




268 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:23:04 2016 done: Tue Nov  8 10:23:04 2016
 Total Scan time:  2.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]