FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9252, 88 aa
  1>>>pF1KE9252 88 - 88 aa - 88 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5537+/-0.000613; mu= 11.9920+/- 0.037
 mean_var=48.9582+/- 9.410, 0's: 0 Z-trim(109.7): 8  B-trim: 0 in 0/49
 Lambda= 0.183300
 statistics sampled from 11087 (11091) to 11087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.341), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS34529.1 CENPW gene_id:387103|Hs108|chr6        (  88)  561 155.1 5.2e-39
CCDS69196.1 CENPW gene_id:387103|Hs108|chr6        ( 103)  306 87.7 1.2e-18
CCDS75516.1 CENPW gene_id:387103|Hs108|chr6        (  67)  264 76.5 1.8e-15


>>CCDS34529.1 CENPW gene_id:387103|Hs108|chr6             (88 aa)
 initn: 561 init1: 561 opt: 561  Z-score: 813.9  bits: 155.1 E(32554): 5.2e-39
Smith-Waterman score: 561; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE9 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVHLNCLLFVHRLAEESRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVHLNCLLFVHRLAEESRT
               10        20        30        40        50        60

               70        80        
pF1KE9 NACASKCRVINKEHVLAAAKVILKKSRG
       ::::::::::::::::::::::::::::
CCDS34 NACASKCRVINKEHVLAAAKVILKKSRG
               70        80        

>>CCDS69196.1 CENPW gene_id:387103|Hs108|chr6             (103 aa)
 initn: 312 init1: 297 opt: 306  Z-score: 448.4  bits: 87.7 E(32554): 1.2e-18
Smith-Waterman score: 521; 85.4% identity (85.4% similar) in 103 aa overlap (1-88:1-103)

               10        20        30        40                    
pF1KE9 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLV---------------HL
       :::::::::::::::::::::::::::::::::::::::::::               ::
CCDS69 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVRFHPFSGWEWGTGEVHL
               10        20        30        40        50        60

          50        60        70        80        
pF1KE9 NCLLFVHRLAEESRTNACASKCRVINKEHVLAAAKVILKKSRG
       :::::::::::::::::::::::::::::::::::::::::::
CCDS69 NCLLFVHRLAEESRTNACASKCRVINKEHVLAAAKVILKKSRG
               70        80        90       100   

>>CCDS75516.1 CENPW gene_id:387103|Hs108|chr6             (67 aa)
 initn: 264 init1: 264 opt: 264  Z-score: 391.2  bits: 76.5 E(32554): 1.8e-15
Smith-Waterman score: 264; 100.0% identity (100.0% similar) in 42 aa overlap (1-42:1-42)

               10        20        30        40        50        60
pF1KE9 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVHLNCLLFVHRLAEESRT
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS75 MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLKSPGQTLVRVNVESLTRS
               10        20        30        40        50        60

               70        80        
pF1KE9 NACASKCRVINKEHVLAAAKVILKKSRG
                                   
CCDS75 MYWPQQR                     
                                   




88 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:18:32 2016 done: Sun Nov  6 11:18:32 2016
 Total Scan time:  1.450 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]