Result of FASTA (omim) for
pFN21AE9249
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9249, 140 aa
1>>>pF1KE9249 140 - 140 aa - 140 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7879+/-0.000251; mu= 6.8783+/- 0.016
mean_var=122.2273+/-24.117, 0's: 0 Z-trim(124.1): 17 B-trim: 379 in 2/59
Lambda= 0.116009
statistics sampled from 45060 (45077) to 45060 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.529), width: 16
Scan time: 4.040
The best scores are: opt bits E(85289)
NP_001800 (OMIM: 117139) histone H3-like centromer ( 140) 943 167.1 8.5e-42
NP_001035891 (OMIM: 117139) histone H3-like centro ( 114) 497 92.4 2.1e-19
NP_066403 (OMIM: 142780) histone H3.2 [Homo sapien ( 136) 376 72.2 3.1e-13
NP_003520 (OMIM: 602810) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_003527 (OMIM: 602818) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_066298 (OMIM: 602816) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_003523 (OMIM: 602813) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_003526 (OMIM: 602817) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_003528 (OMIM: 602819) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_003522 (OMIM: 602812) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_003525 (OMIM: 602815) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_003521 (OMIM: 602811) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_003524 (OMIM: 602814) histone H3.1 [Homo sapien ( 136) 374 71.8 3.9e-13
NP_005315 (OMIM: 601058) histone H3.3 [Homo sapien ( 136) 373 71.7 4.3e-13
NP_002098 (OMIM: 601128) histone H3.3 [Homo sapien ( 136) 373 71.7 4.3e-13
NP_003484 (OMIM: 602820) histone H3.1t [Homo sapie ( 136) 365 70.3 1.1e-12
NP_001013721 (OMIM: 616134) histone H3.3C [Homo sa ( 135) 350 67.8 6.2e-12
>>NP_001800 (OMIM: 117139) histone H3-like centromeric p (140 aa)
initn: 943 init1: 943 opt: 943 Z-score: 871.4 bits: 167.1 E(85289): 8.5e-42
Smith-Waterman score: 943; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)
10 20 30 40 50 60
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT
70 80 90 100 110 120
130 140
pF1KE9 LFPKDVQLARRIRGLEEGLG
::::::::::::::::::::
NP_001 LFPKDVQLARRIRGLEEGLG
130 140
>>NP_001035891 (OMIM: 117139) histone H3-like centromeri (114 aa)
initn: 562 init1: 497 opt: 497 Z-score: 469.2 bits: 92.4 E(85289): 2.1e-19
Smith-Waterman score: 706; 81.4% identity (81.4% similar) in 140 aa overlap (1-140:1-114)
10 20 30 40 50 60
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT
::::::::::: :::::::::::::::::::::::
NP_001 LIRKLPFSRLA--------------------------AEAFLVHLFEDAYLLTLHAGRVT
70 80 90
130 140
pF1KE9 LFPKDVQLARRIRGLEEGLG
::::::::::::::::::::
NP_001 LFPKDVQLARRIRGLEEGLG
100 110
>>NP_066403 (OMIM: 142780) histone H3.2 [Homo sapiens] (136 aa)
initn: 349 init1: 219 opt: 376 Z-score: 358.7 bits: 72.2 E(85289): 3.1e-13
Smith-Waterman score: 376; 50.8% identity (74.2% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
NP_066 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..:::::.::.:: ::::. : ..
NP_066 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
NP_066 HAKRVTIMPKDIQLARRIRGERA
120 130
>>NP_003520 (OMIM: 602810) histone H3.1 [Homo sapiens] (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
NP_003 HAKRVTIMPKDIQLARRIRGERA
120 130
>>NP_003527 (OMIM: 602818) histone H3.1 [Homo sapiens] (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
NP_003 HAKRVTIMPKDIQLARRIRGERA
120 130
>>NP_066298 (OMIM: 602816) histone H3.1 [Homo sapiens] (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
NP_066 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
NP_066 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
NP_066 HAKRVTIMPKDIQLARRIRGERA
120 130
>>NP_003523 (OMIM: 602813) histone H3.1 [Homo sapiens] (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
NP_003 HAKRVTIMPKDIQLARRIRGERA
120 130
>>NP_003526 (OMIM: 602817) histone H3.1 [Homo sapiens] (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
NP_003 HAKRVTIMPKDIQLARRIRGERA
120 130
>>NP_003528 (OMIM: 602819) histone H3.1 [Homo sapiens] (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
NP_003 HAKRVTIMPKDIQLARRIRGERA
120 130
>>NP_003522 (OMIM: 602812) histone H3.1 [Homo sapiens] (136 aa)
initn: 347 init1: 217 opt: 374 Z-score: 356.9 bits: 71.8 E(85289): 3.9e-13
Smith-Waterman score: 374; 50.8% identity (73.5% similar) in 132 aa overlap (5-134:9-133)
10 20 30 40 50
pF1KE9 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKL
:.: .:::.. : . . .:. :. .. : : : : :.:::.
NP_003 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRY
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTL
::::.::::::::.::.::: : .:. .:..:..::::: ::.:: ::::. : ..
NP_003 QKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEACEAYLVGLFEDTNLCAI
60 70 80 90 100 110
120 130 140
pF1KE9 HAGRVTLFPKDVQLARRIRGLEEGLG
:: :::..:::.::::::::
NP_003 HAKRVTIMPKDIQLARRIRGERA
120 130
140 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:36:43 2016 done: Sun Nov 6 18:36:43 2016
Total Scan time: 4.040 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]