FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6893, 365 aa
  1>>>pF1KE6893 365 - 365 aa - 365 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3602+/-0.000785; mu= 16.7362+/- 0.047
 mean_var=71.4254+/-13.976, 0's: 0 Z-trim(108.6): 7  B-trim: 50 in 1/50
 Lambda= 0.151757
 statistics sampled from 10323 (10327) to 10323 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.317), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS12733.1 FUT1 gene_id:2523|Hs108|chr19          ( 365) 2569 571.4 4.3e-163
CCDS33069.1 FUT2 gene_id:2524|Hs108|chr19          ( 343) 1413 318.3 6.3e-87


>>CCDS12733.1 FUT1 gene_id:2523|Hs108|chr19               (365 aa)
 initn: 2569 init1: 2569 opt: 2569  Z-score: 3041.5  bits: 571.4 E(32554): 4.3e-163
Smith-Waterman score: 2569; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KE6 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFVGVHVRRGDYLQVMPQRWKGVVGDSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVTFAGDGQEATPWKDFALLTQC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWVGINADLSPLW
              310       320       330       340       350       360

            
pF1KE6 TLAKP
       :::::
CCDS12 TLAKP
            

>>CCDS33069.1 FUT2 gene_id:2524|Hs108|chr19               (343 aa)
 initn: 1436 init1: 866 opt: 1413  Z-score: 1674.0  bits: 318.3 E(32554): 6.3e-87
Smith-Waterman score: 1413; 67.7% identity (85.4% similar) in 294 aa overlap (66-359:49-340)

          40        50        60        70        80        90     
pF1KE6 LGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQ
                                     ::.:    :..: : ::.   ::.:::::.
CCDS33 VFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQLRGMWTINAIGRLGNQMGE
       20        30        40        50        60        70        

         100       110       120       130       140       150     
pF1KE6 YATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYA
       :::: :::..::: :::   ::..:::.::::::::   . :: ::.. .:.::: ::: 
CCDS33 YATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATASRIPWQNYHLNDWMEEEYR
       80        90       100       110       120       130        

         160       170       180       190       200       210     
pF1KE6 DLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFV
        .   .....:.::::::.::::..: .:::::::.:::::. :  :...  :.:: :::
CCDS33 HIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQKFLRGLQVN--GSRPGTFV
      140       150       160       170       180         190      

         220       230       240       250       260       270     
pF1KE6 GVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTS
       :::::::::..:::. :::::.:  ::.::.::::::. . .:::::::: ::.::::::
CCDS33 GVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFVVTSNGMAWCRENIDTS
        200       210       220       230       240       250      

         280       290       300       310       320       330     
pF1KE6 QGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEF
       .:::.::::: :..: ::::::::::::::::::::.:::::.::::.::::.::::: :
CCDS33 HGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTGGDTIYLANYTLPDSPF
        260       270       280       290       300       310      

         340       350       360     
pF1KE6 LKIFKPEAAFLPEWVGINADLSPLWTLAKP
       ::::::::::::::.:: ::::::      
CCDS33 LKIFKPEAAFLPEWTGIAADLSPLLKH   
        320       330       340      




365 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:17:10 2016 done: Tue Nov  8 03:17:10 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]