FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6789, 580 aa
  1>>>pF1KE6789 580 - 580 aa - 580 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4474+/-0.000977; mu= 17.4025+/- 0.059
 mean_var=60.1776+/-11.886, 0's: 0 Z-trim(103.8): 20  B-trim: 36 in 1/48
 Lambda= 0.165332
 statistics sampled from 7593 (7597) to 7593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.233), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS2709.1 POMGNT2 gene_id:84892|Hs108|chr3        ( 580) 3930 946.3       0
CCDS63684.1 EOGT gene_id:285203|Hs108|chr3         ( 527)  259 70.6 5.4e-12


>>CCDS2709.1 POMGNT2 gene_id:84892|Hs108|chr3             (580 aa)
 initn: 3930 init1: 3930 opt: 3930  Z-score: 5060.3  bits: 946.3 E(32554):    0
Smith-Waterman score: 3930; 100.0% identity (100.0% similar) in 580 aa overlap (1-580:1-580)

               10        20        30        40        50        60
pF1KE6 MHLSAVFNALLVSVLAAVLWKHVRLREHAATLEEELALSRQATEPAPALRIDYPKALQIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MHLSAVFNALLVSVLAAVLWKHVRLREHAATLEEELALSRQATEPAPALRIDYPKALQIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 MEGGTHMVCTGRTHTDRICRFKWLCYSNEAEEFIFFHGNTSVMLPNLGSRRFQPALLDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MEGGTHMVCTGRTHTDRICRFKWLCYSNEAEEFIFFHGNTSVMLPNLGSRRFQPALLDLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TVEDHNTQYFNFVELPAAALRFMPKPVFVPDVALIANRFNPDNLMHVFHDDLLPLFYTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 TVEDHNTQYFNFVELPAAALRFMPKPVFVPDVALIANRFNPDNLMHVFHDDLLPLFYTLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QFPGLAHEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKTLGRLLCFSHAFVGLSKIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QFPGLAHEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKTLGRLLCFSHAFVGLSKIT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 TWYQYGFVQPQGPKANILVSGNEIRQFARFMTEKLNVSHTGVPLGEEYILVFSRTQNRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 TWYQYGFVQPQGPKANILVSGNEIRQFARFMTEKLNVSHTGVPLGEEYILVFSRTQNRLI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 LNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGAT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 VVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPENTVTHPERPWDQGGITHLDRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPENTVTHPERPWDQGGITHLDRA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 EQARILQSREVPRHLCCRNPEWLFRIYQDTKVDIPSLIQTIRRVVKGRPGPRKQKWTVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 EQARILQSREVPRHLCCRNPEWLFRIYQDTKVDIPSLIQTIRRVVKGRPGPRKQKWTVGL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 YPGKVREARCQASVHGASEARLTVSWQIPWNLKYLKVREVKYEVWLQEQGENTYVPYILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 YPGKVREARCQASVHGASEARLTVSWQIPWNLKYLKVREVKYEVWLQEQGENTYVPYILA
              490       500       510       520       530       540

              550       560       570       580
pF1KE6 LQNHTFTENIKPFTTYLVWVRCIFNKILLGPFADVLVCNT
       ::::::::::::::::::::::::::::::::::::::::
CCDS27 LQNHTFTENIKPFTTYLVWVRCIFNKILLGPFADVLVCNT
              550       560       570       580

>>CCDS63684.1 EOGT gene_id:285203|Hs108|chr3              (527 aa)
 initn: 133 init1:  77 opt: 259  Z-score: 328.8  bits: 70.6 E(32554): 5.4e-12
Smith-Waterman score: 259; 26.9% identity (57.7% similar) in 305 aa overlap (163-449:245-525)

            140       150       160       170       180       190  
pF1KE6 VELPAAALRFMPKPVFVPDVALIANRFNPDNLMHVFHDDLLPLFYTLRQFPGLAHEARLF
                                     :..: : : .. :. : .   ... .. . 
CCDS63 TQLNFRPIEDAKCDIVIEKPTYFMKLDAGVNMYHHFCD-FINLYITQHVNNSFSTDVYIV
          220       230       240       250        260       270   

              200        210       220        230       240        
pF1KE6 FME--GWGEGAHF-DLYKLLSPKQPLLRAQLKTL-GRLLCFSHAFVGLSKITTWYQYGFV
       . .  ..: :  : : .. ..  . .   .:::  .. .::..:  .:      ..::. 
CCDS63 MWDTSSYGYGDLFSDTWNAFTDYDVI---HLKTYDSKRVCFKEAVFSL---LPRMRYGLF
           280       290          300       310          320       

      250       260           270       280       290        300   
pF1KE6 QPQGPKANILVSGNE----IRQFARFMTEKLNVSHTGVPLGEEYILVFSR-TQNRLILNE
         . :    :.:: .    .: ::. . ..::... :   :.  . ...: :. : :::.
CCDS63 Y-NTP----LISGCQNTGLFRAFAQHVLHRLNITQEGPKDGKIRVTILARSTEYRKILNQ
        330           340       350       360       370       380  

           310         320       330       340       350       360 
pF1KE6 AELLLAL--AQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGATV
        ::. ::  .. :... :  . ..  : : .:.. :......:::: :.  ::::  :.:
CCDS63 NELVNALKTVSTFEVQIVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAV
            390       400       410       420       430       440  

             370       380       390          400          410     
pF1KE6 VELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWR---NMMPENTVTHP---ERPWDQGGIT
        ::.    : .    :  :: : :.  .:..::   ...:..   ::   :.:  .    
CCDS63 FELY----NCEDERCYLDLARLRGV--HYITWRRQNKVFPQDKGHHPTLGEHP--KFTNY
                450       460         470       480         490    

         420        430       440       450       460       470    
pF1KE6 HLDRAE-QARILQSREVPRHLCCRNPEWLFRIYQDTKVDIPSLIQTIRRVVKGRPGPRKQ
        .:  : .  .::. .   :.  ..:.: :.  .:                         
CCDS63 SFDVEEFMYLVLQAAD---HVL-QHPKWPFKKKHDEL                       
          500       510           520                              

          480       490       500       510       520       530    
pF1KE6 KWTVGLYPGKVREARCQASVHGASEARLTVSWQIPWNLKYLKVREVKYEVWLQEQGENTY




580 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 16:22:03 2016 done: Tue Nov  8 16:22:03 2016
 Total Scan time:  2.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]