Result of FASTA (ccds) for
pFN21AE6771
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6771, 563 aa
1>>>pF1KE6771 563 - 563 aa - 563 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6101+/-0.000965; mu= 16.4720+/- 0.058
mean_var=64.3245+/-12.796, 0's: 0 Z-trim(104.3): 7 B-trim: 20 in 1/49
Lambda= 0.159914
statistics sampled from 7833 (7836) to 7833 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.241), width: 16
Scan time: 1.990
The best scores are: opt bits E(32554)
CCDS34184.1 MCCC2 gene_id:64087|Hs108|chr5 ( 563) 3746 873.4 0
CCDS3089.1 PCCB gene_id:5096|Hs108|chr3 ( 539) 770 186.8 5.8e-47
CCDS54643.1 PCCB gene_id:5096|Hs108|chr3 ( 559) 619 152.0 1.8e-36
>>CCDS34184.1 MCCC2 gene_id:64087|Hs108|chr5 (563 aa)
initn: 3746 init1: 3746 opt: 3746 Z-score: 4666.9 bits: 873.4 E(32554): 0
Smith-Waterman score: 3746; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)
10 20 30 40 50 60
pF1KE6 MWAVLRLALRPCARASPAGPRAYHGDSVASLGTQPDLGSALYQENYKQMKALVNQLHERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MWAVLRLALRPCARASPAGPRAYHGDSVASLGTQPDLGSALYQENYKQMKALVNQLHERV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 EHIKLGGGEKARALHISRGKLLPRERIDNLIDPGSPFLELSQFAGYQLYDNEEVPGGGII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EHIKLGGGEKARALHISRGKLLPRERIDNLIDPGSPFLELSQFAGYQLYDNEEVPGGGII
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 TGIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGAYLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TGIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGAYLPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 QADVFPDRDHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVPAMADENIIVRKQGTIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QADVFPDRDHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVPAMADENIIVRKQGTIF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LAGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHALHLTRKVVRNLNYQKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LAGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHALHLTRKVVRNLNYQKKL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 DVTIEPSEEPLFPADELYGIVGANLKRSFDVREVIARIVDGSRFTEFKAFYGDTLVTGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DVTIEPSEEPLFPADELYGIVGANLKRSFDVREVIARIVDGSRFTEFKAFYGDTLVTGFA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 RIFGYPVGIVGNNGVLFSESAKKGTHFVQLCCQRNIPLLFLQNITGFMVGREYEAEGIAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RIFGYPVGIVGNNGVLFSESAKKGTHFVQLCCQRNIPLLFLQNITGFMVGREYEAEGIAK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 DGAKMVAAVACAQVPKITLIIGGSYGAGNYGMCGRAYSPRFLYIWPNARISVMGGEQAAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DGAKMVAAVACAQVPKITLIIGGSYGAGNYGMCGRAYSPRFLYIWPNARISVMGGEQAAN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 VLATITKDQRAREGKQFSSADEAALKEPIIKKFEEEGNPYYSSARVWDDGIIDPADTRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VLATITKDQRAREGKQFSSADEAALKEPIIKKFEEEGNPYYSSARVWDDGIIDPADTRLV
490 500 510 520 530 540
550 560
pF1KE6 LGLSFSAALNAPIEKTDFGIFRM
:::::::::::::::::::::::
CCDS34 LGLSFSAALNAPIEKTDFGIFRM
550 560
>>CCDS3089.1 PCCB gene_id:5096|Hs108|chr3 (539 aa)
initn: 814 init1: 237 opt: 770 Z-score: 956.6 bits: 186.8 E(32554): 5.8e-47
Smith-Waterman score: 811; 31.9% identity (61.3% similar) in 530 aa overlap (28-538:7-512)
10 20 30 40 50 60
pF1KE6 MWAVLRLALRPCARASPAGPRAYHGDSVASLGTQPDLGSALYQENYKQMKALVNQLHERV
::..:.. .. .. . ... . .....::.
CCDS30 MAAALRVAAVGARLSVLASGLRAAVRSLCSQATSVNERI
10 20 30
70 80 90 100 110
pF1KE6 EHIK----LGGGEKARALHISRGKLLPRERIDNLIDPGSPFLELSQF-----AGYQLY-D
:. . ::::.. . .:::: ::::. :.:::: :.: ..: : . . :
CCDS30 ENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAAD
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE6 NEEVPGGGIITGIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNRLPCIYL
... :: ...:: ::..: .....: :: ::. . ..: . .. :. : : :
CCDS30 KNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGL
100 110 120 130 140 150
180 190 200 210 220
pF1KE6 VDSGGAYLPRQADVFPDR-DHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVPAMADE
::::: . . .. . : : :. . .: : ::...:: :..:..: ::..:
CCDS30 NDSGGARIQEGVESLAGYADIFLRN-----VTASGVIPQISLIMGPCAGGAVYSPALTDF
160 170 180 190 200 210
230 240 250 260 270 280
pF1KE6 NIIVRKQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHALHLTRK
...:. . .:..:: .::..:.:.:. :.:::: : :::. . .: :: :
CCDS30 TFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRD
220 230 240 250 260 270
290 300 310 320 330 340
pF1KE6 VVRNLNYQKKLDVTIEPSEEP---LFPADELYGIVGANLKRSFDVREVIARIVDGSRFTE
: ... . .. ..: : : :: :: . ..... ..: .:: .: :
CCDS30 FFNYLPLSSQDPAPVRECHDPSDRLVP--ELDTIVPLESTKAYNMVDIIHSVVDEREFFE
280 290 300 310 320 330
350 360 370 380 390 400
pF1KE6 FKAFYGDTLVTGFARIFGYPVGIVGN-----NGVLFSESAKKGTHFVQLCCQRNIPLLFL
. :. ....::::. : :::::: .: : .:. ::..::..: ::::. .
CCDS30 IMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITF
340 350 360 370 380 390
410 420 430 440 450 460
pF1KE6 QNITGFMVGREYEAEGIAKDGAKMVAAVACAQVPKITLIIGGSYGAGNYGMCGRAYSPRF
.. ::. : : :: . :::.. : : : :::.:.: .::.. : ..
CCDS30 VDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDT
400 410 420 430 440 450
470 480 490 500 510 520
pF1KE6 LYIWPNARISVMGGEQAANVLATITKDQRAREGKQFSSADEAALKEPIIKKFEEEGNPYY
: ::.:.:.:::.. :... : : .. :. : :.:: .::.
CCDS30 NYAWPTAEIAVMGAKGAVEI---IFKGHENVEAAQ----------AEYIEKF---ANPFP
460 470 480 490
530 540 550 560
pF1KE6 SSARVWDDGIIDPADTRLVLGLSFSAALNAPIEKTDFGIFRM
...: . : ::.:..::
CCDS30 AAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL
500 510 520 530
>>CCDS54643.1 PCCB gene_id:5096|Hs108|chr3 (559 aa)
initn: 789 init1: 237 opt: 619 Z-score: 768.1 bits: 152.0 E(32554): 1.8e-36
Smith-Waterman score: 766; 30.9% identity (58.9% similar) in 550 aa overlap (28-538:7-532)
10 20 30 40 50 60
pF1KE6 MWAVLRLALRPCARASPAGPRAYHGDSVASLGTQPDLGSALYQENYKQMKALVNQLHERV
::..:.. .. .. . ... . .....::.
CCDS54 MAAALRVAAVGARLSVLASGLRAAVRSLCSQATSVNERI
10 20 30
70 80 90 100 110
pF1KE6 EHIK----LGGGEKARALHISRGKLLPRERIDNLIDPGSPFLELSQF-----AGYQLY-D
:. . ::::.. . .:::: ::::. :.:::: :.: ..: : . . :
CCDS54 ENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAAD
40 50 60 70 80 90
120 130 140 150
pF1KE6 NEEVPGGGIITGIGRVSG--------------------VECMIIANDATVKGGAYYPVTV
... :: ...:: ::..: . . :.: :: ::. . .
CCDS54 KNKFPGDSVVTGRGRINGRLVYVFSQQIIGWAQWLPLVISALWEAEDFTVFGGSLSGAHA
100 110 120 130 140 150
160 170 180 190 200
pF1KE6 KKQLRAQEIAMQNRLPCIYLVDSGGAYLPRQADVFPDR-DHFGRTFYNQAIMSSKNIAQI
.: . .. :. : : : ::::: . . .. . : : :. . .: : ::
CCDS54 QKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRN-----VTASGVIPQI
160 170 180 190 200 210
210 220 230 240 250 260
pF1KE6 AVVMGSCTAGGAYVPAMADENIIVRKQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCRK
...:: :..:..: ::..: ...:. . .:..:: .::..:.:.:. :.:::: :
CCDS54 SLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTM
220 230 240 250 260 270
270 280 290 300 310 320
pF1KE6 SGVSDHWALDDHHALHLTRKVVRNLNYQKKLDVTIEPSEEP---LFPADELYGIVGANLK
:::. . .: :: : : ... . .. ..: : : :: :: .
CCDS54 SGVAHRAFENDVDALCNLRDFFNYLPLSSQDPAPVRECHDPSDRLVP--ELDTIVPLEST
280 290 300 310 320 330
330 340 350 360 370 380
pF1KE6 RSFDVREVIARIVDGSRFTEFKAFYGDTLVTGFARIFGYPVGIVGN-----NGVLFSESA
..... ..: .:: .: :. :. ....::::. : :::::: .: : .:.
CCDS54 KAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSS
340 350 360 370 380 390
390 400 410 420 430 440
pF1KE6 KKGTHFVQLCCQRNIPLLFLQNITGFMVGREYEAEGIAKDGAKMVAAVACAQVPKITLII
::..::..: ::::. . .. ::. : : :: . :::.. : : : :::.:.:
CCDS54 VKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVIT
400 410 420 430 440 450
450 460 470 480 490 500
pF1KE6 GGSYGAGNYGMCGRAYSPRFLYIWPNARISVMGGEQAANVLATITKDQRAREGKQFSSAD
.::.. : .. : ::.:.:.:::.. :... : : .. :. :
CCDS54 RKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEI---IFKGHENVEAAQ-----
460 470 480 490 500
510 520 530 540 550 560
pF1KE6 EAALKEPIIKKFEEEGNPYYSSARVWDDGIIDPADTRLVLGLSFSAALNAPIEKTDFGIF
:.:: .::. ...: . : ::.:..::
CCDS54 -----AEYIEKF---ANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHA
510 520 530 540 550
pF1KE6 RM
CCDS54 NIPL
563 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:13:28 2016 done: Tue Nov 8 16:13:28 2016
Total Scan time: 1.990 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]