FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6751, 593 aa
  1>>>pF1KE6751 593 - 593 aa - 593 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5731+/-0.000832; mu= 17.3106+/- 0.050
 mean_var=67.3275+/-13.406, 0's: 0 Z-trim(107.2): 28  B-trim: 11 in 1/49
 Lambda= 0.156307
 statistics sampled from 9427 (9444) to 9427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.29), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS33358.1 MARS2 gene_id:92935|Hs108|chr2         ( 593) 4124 939.1       0


>>CCDS33358.1 MARS2 gene_id:92935|Hs108|chr2              (593 aa)
 initn: 4124 init1: 4124 opt: 4124  Z-score: 5021.2  bits: 939.1 E(32554):    0
Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 593 aa overlap (1-593:1-593)

               10        20        30        40        50        60
pF1KE6 MLRTSVLRLLGRTGASRLSLLEDFGPRYYSSGSLSAGDDACDVRAYFTTPIFYVNAAPHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLRTSVLRLLGRTGASRLSLLEDFGPRYYSSGSLSAGDDACDVRAYFTTPIFYVNAAPHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 FQQLFQEAGISCTDFIRTTEARHRVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFLPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FQQLFQEAGISCTDFIRTTEARHRVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFLPEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQAITPEPFHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQAITPEPFHH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VVLQWLDEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYLTVIGYPNAEFKSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VVLQWLDEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYLTVIGYPNAEFKSW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 WPATSHIIGKDILKFHAIYWPAFLLGAGMSPPQRICVHSHWTVCGQKMSKSLGNVVDPRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WPATSHIIGKDILKFHAIYWPAFLLGAGMSPPQRICVHSHWTVCGQKMSKSLGNVVDPRT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 CLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADALGGLLNRCTAKRINPSET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADALGGLLNRCTAKRINPSET
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 YPAFCTTCFPSEPGLVGPSVRAQAEDYALVSAVATLPKQVADHYDNFRIYKALEAVSSCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YPAFCTTCFPSEPGLVGPSVRAQAEDYALVSAVATLPKQVADHYDNFRIYKALEAVSSCV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 RQTNGFVQRHAPWKLNWESPVDAPWLGTVLHVALECLRVFGTLLQPVTPSLADKLLSRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RQTNGFVQRHAPWKLNWESPVDAPWLGTVLHVALECLRVFGTLLQPVTPSLADKLLSRLG
              490       500       510       520       530       540

              550       560       570       580       590   
pF1KE6 VSASERSLGELYFLPRFYGHPCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VSASERSLGELYFLPRFYGHPCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT
              550       560       570       580       590   




593 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 16:01:18 2016 done: Tue Nov  8 16:01:19 2016
 Total Scan time:  3.380 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]