FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6749, 542 aa
  1>>>pF1KE6749 542 - 542 aa - 542 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2589+/-0.00104; mu= 0.0500+/- 0.062
 mean_var=188.1386+/-38.115, 0's: 0 Z-trim(110.8): 21  B-trim: 163 in 1/51
 Lambda= 0.093505
 statistics sampled from 11889 (11904) to 11889 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.366), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS3871.1 PAPD7 gene_id:11044|Hs108|chr5          ( 542) 3609 499.4 4.3e-141
CCDS54006.1 PAPD5 gene_id:64282|Hs108|chr16        ( 698) 1648 234.9 2.3e-61


>>CCDS3871.1 PAPD7 gene_id:11044|Hs108|chr5               (542 aa)
 initn: 3609 init1: 3609 opt: 3609  Z-score: 2646.5  bits: 499.4 E(32554): 4.3e-141
Smith-Waterman score: 3609; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:1-542)

               10        20        30        40        50        60
pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
              490       500       510       520       530       540

         
pF1KE6 SR
       ::
CCDS38 SR
         

>>CCDS54006.1 PAPD5 gene_id:64282|Hs108|chr16             (698 aa)
 initn: 1642 init1: 1554 opt: 1648  Z-score: 1215.1  bits: 234.9 E(32554): 2.3e-61
Smith-Waterman score: 1648; 66.1% identity (84.5% similar) in 386 aa overlap (1-380:210-595)

                                             10        20        30
pF1KE6                               MSPCPEEAAMRREVVKRIETVVKDLWPTAD
                                     ::: :::  :: :::.:::.:.:.:::.::
CCDS54 VVYSGTPWKRRNYNQGVVGLHEEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSAD
     180       190       200       210       220       230         

               40        50        60        70        80        90
pF1KE6 VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPII
       :::::::.:::::::::::::::::::  ::  ::.:::::.::.  :.:::::::::::
CCDS54 VQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPII
     240       250       260       270       280       290         

              100       110       120       130       140       150
pF1KE6 KLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGG
       ::::. ::::::::::...:::::..::.. ::: .::::.:::::::::::::::::::
CCDS54 KLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGG
     300       310       320       330       340       350         

              160       170       180       190       200       210
pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI
       :.::::.:::.:::::::: ::   . : :.::.::::::::.:::::::::::.::.:.
CCDS54 IGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYV
     360       370       380       390       400       410         

              220       230       240       250       260       270
pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR
       ::.:..: : .::::::: ::::: :::::::::::::::::.:::::.::::::::.:.
CCDS54 AKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAK
     420       430       440       450       460       470         

              280       290       300       310           320      
pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSR----IKIKERIATCN
        ::: ..:: :::::.::.::  :: ::...:: : .: :. ..     :   ...  ::
CCDS54 YYPNNETESILGRIIRVTDEVATYRDWISKQWGLKNRPEPSCNGNGVTLIVDTQQLDKCN
     480       490       500       510       520       530         

        330       340       350         360       370       380    
pF1KE6 GEQTQNREPESPYGQRLTLSLSSPQLLSSGS--SASSVSSLSGSDVDSDTPPCTTPSVYQ
       .. ... :  .   .. . :::. .  ::..  :.::... :.::::::. :: ::    
CCDS54 NNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLL
     540       550       560       570       580       590         

          390       400       410       420       430       440    
pF1KE6 FSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAG
                                                                   
CCDS54 CRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQ
     600       610       620       630       640       650         




542 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 16:00:13 2016 done: Tue Nov  8 16:00:13 2016
 Total Scan time:  2.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]