FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6724, 693 aa
  1>>>pF1KE6724 693 - 693 aa - 693 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4810+/-0.00101; mu= 18.4076+/- 0.061
 mean_var=64.8896+/-13.148, 0's: 0 Z-trim(104.3): 23  B-trim: 127 in 1/50
 Lambda= 0.159216
 statistics sampled from 7823 (7834) to 7823 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.241), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS46941.1 GMPS gene_id:8833|Hs108|chr3           ( 693) 4552 1054.9       0


>>CCDS46941.1 GMPS gene_id:8833|Hs108|chr3                (693 aa)
 initn: 4552 init1: 4552 opt: 4552  Z-score: 5644.6  bits: 1054.9 E(32554):    0
Smith-Waterman score: 4552; 100.0% identity (100.0% similar) in 693 aa overlap (1-693:1-693)

               10        20        30        40        50        60
pF1KE6 MALCNGDSKLENAGGDLKDGHHHYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MALCNGDSKLENAGGDLKDGHHHYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 HSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 EVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 ILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASVKKPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASVKKPH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 TLLQRVKACTTEEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TLLQRVKACTTEEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDW
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE6 ESLIFLARLIPRMCHNVNRVVYIFGPPVKEPPTDVTPTFLTTGVLSTLRQADFEAHNILR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ESLIFLARLIPRMCHNVNRVVYIFGPPVKEPPTDVTPTFLTTGVLSTLRQADFEAHNILR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE6 ESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFITSDFMTGIPATPGNEIPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFITSDFMTGIPATPGNEIPVE
              610       620       630       640       650       660

              670       680       690   
pF1KE6 VVLKMVTEIKKIPGISRIMYDLTSKPPGTTEWE
       :::::::::::::::::::::::::::::::::
CCDS46 VVLKMVTEIKKIPGISRIMYDLTSKPPGTTEWE
              670       680       690   




693 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:43:59 2016 done: Tue Nov  8 15:44:00 2016
 Total Scan time:  2.280 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]