Result of FASTA (ccds) for
pFN21AE6722
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6722, 765 aa
1>>>pF1KE6722 765 - 765 aa - 765 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8847+/-0.000899; mu= 17.4079+/- 0.054
mean_var=74.9572+/-14.934, 0's: 0 Z-trim(106.6): 14 B-trim: 91 in 1/49
Lambda= 0.148138
statistics sampled from 9042 (9053) to 9042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.278), width: 16
Scan time: 2.280
The best scores are: opt bits E(32554)
CCDS9668.1 SEC23A gene_id:10484|Hs108|chr14 ( 765) 5193 1119.6 0
CCDS13137.1 SEC23B gene_id:10483|Hs108|chr20 ( 767) 4539 979.8 0
>>CCDS9668.1 SEC23A gene_id:10484|Hs108|chr14 (765 aa)
initn: 5193 init1: 5193 opt: 5193 Z-score: 5992.8 bits: 1119.6 E(32554): 0
Smith-Waterman score: 5193; 99.7% identity (100.0% similar) in 765 aa overlap (1-765:1-765)
10 20 30 40 50 60
pF1KE6 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 EGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNL
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS96 EGISKSYVFRGTKDLSAKQLQEMLGLSKVPLTQATRGPQVQQPPPSNRFLQPVQKIDMNL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 TDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 VVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 KCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 GPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 FVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 FVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 DVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 DVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDES
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE6 SYYRHHFMRQDLTQSLIMIQPIMYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYH
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS96 SYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE6 GETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLS
670 680 690 700 710 720
730 740 750 760
pF1KE6 KVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA
:::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA
730 740 750 760
>>CCDS13137.1 SEC23B gene_id:10483|Hs108|chr20 (767 aa)
initn: 3268 init1: 3268 opt: 4539 Z-score: 5237.4 bits: 979.8 E(32554): 0
Smith-Waterman score: 4539; 84.9% identity (95.8% similar) in 767 aa overlap (1-764:1-766)
10 20 30 40 50 60
pF1KE6 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL
:.:::::::::::::::::::::::::::::::::::.: :.:::::::::::.::::::
CCDS13 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV
::: ::.:::::::::::::::::::::.:::::::.:.::::.::::::.::::.::::
CCDS13 CSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGC
. :: : :::::::::::.:..::::::::.::::::::: :::::::::::::::::.:
CCDS13 IQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSC
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 EGISKSYVFRGTKDLSAKQLQEMLGLSK--VPVTQATRGPQVQQPP-PSNRFLQPVQKID
:::::::::::::::.:::.:.::::.: .:. :: : : :. : :.::::::.:::
CCDS13 EGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQA-RPAQPQEHPFASSRFLQPVHKID
190 200 210 220 230
240 250 260 270 280 290
pF1KE6 MNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQG
::::::::::::::::: ::::::::.:::::::::::: ::::::::::.: ::: :::
CCDS13 MNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE6 PGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGL
:::::::::: ::::::::.::::...::.:::.: ::::.:..:: :::::::::::::
CCDS13 PGMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGL
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE6 LEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKIS
:::::: ::::::::::::::::::::::::.::::..:.:.:.::.::..:::::.::.
CCDS13 LEMKCCANLTGGYMVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIA
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE6 GAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRG
:::::::::: :::::::::.:.::: :::::::.::.::.::::::::::.::::::::
CCDS13 GAIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRG
420 430 440 450 460 470
480 490 500 510 520 530
pF1KE6 AIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETE
::::::.::::: :::::::::::::::.:.:...: :.:::::::.:::::...:::.:
CCDS13 AIQFVTHYQHSSTQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESE
480 490 500 510 520 530
540 550 560 570 580 590
pF1KE6 EGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSP
:::::::::::::::::::::.:.:.::.:::.:..:::::::::::::: :::::::::
CCDS13 EGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSP
540 550 560 570 580 590
600 610 620 630 640 650
pF1KE6 DESSYYRHHFMRQDLTQSLIMIQPIMYAYSFSGPPEPVLLDSSSILADRILLMDTFFQIL
:::::::::: ::::::::::::::.:.::: :::::::::::::::::::::::::::.
CCDS13 DESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIV
600 610 620 630 640 650
660 670 680 690 700 710
pF1KE6 IYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARF
:: :::::::::.:::::::::::.::::::.:::::::..::::::::.::::::::::
CCDS13 IYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARF
660 670 680 690 700 710
720 730 740 750 760
pF1KE6 LLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA
:::::::::::::.::::::.::::::::::::::::::::::::::
CCDS13 LLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC
720 730 740 750 760
765 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:42:28 2016 done: Tue Nov 8 15:42:29 2016
Total Scan time: 2.280 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]