FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6722, 765 aa 1>>>pF1KE6722 765 - 765 aa - 765 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8847+/-0.000899; mu= 17.4079+/- 0.054 mean_var=74.9572+/-14.934, 0's: 0 Z-trim(106.6): 14 B-trim: 91 in 1/49 Lambda= 0.148138 statistics sampled from 9042 (9053) to 9042 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.278), width: 16 Scan time: 2.280 The best scores are: opt bits E(32554) CCDS9668.1 SEC23A gene_id:10484|Hs108|chr14 ( 765) 5193 1119.6 0 CCDS13137.1 SEC23B gene_id:10483|Hs108|chr20 ( 767) 4539 979.8 0 >>CCDS9668.1 SEC23A gene_id:10484|Hs108|chr14 (765 aa) initn: 5193 init1: 5193 opt: 5193 Z-score: 5992.8 bits: 1119.6 E(32554): 0 Smith-Waterman score: 5193; 99.7% identity (100.0% similar) in 765 aa overlap (1-765:1-765) 10 20 30 40 50 60 pF1KE6 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 VLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 EGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNL ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: CCDS96 EGISKSYVFRGTKDLSAKQLQEMLGLSKVPLTQATRGPQVQQPPPSNRFLQPVQKIDMNL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 TDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 TDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 VVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 VVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 KCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 KCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAI 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 GPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 GPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 FVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 FVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGP 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE6 DVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 DVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDES 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE6 SYYRHHFMRQDLTQSLIMIQPIMYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYH ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: CCDS96 SYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYH 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE6 GETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 GETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLS 670 680 690 700 710 720 730 740 750 760 pF1KE6 KVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA ::::::::::::::::::::::::::::::::::::::::::::: CCDS96 KVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA 730 740 750 760 >>CCDS13137.1 SEC23B gene_id:10483|Hs108|chr20 (767 aa) initn: 3268 init1: 3268 opt: 4539 Z-score: 5237.4 bits: 979.8 E(32554): 0 Smith-Waterman score: 4539; 84.9% identity (95.8% similar) in 767 aa overlap (1-764:1-766) 10 20 30 40 50 60 pF1KE6 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL :.:::::::::::::::::::::::::::::::::::.: :.:::::::::::.:::::: CCDS13 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV ::: ::.:::::::::::::::::::::.:::::::.:.::::.::::::.::::.:::: CCDS13 CSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGC . :: : :::::::::::.:..::::::::.::::::::: :::::::::::::::::.: CCDS13 IQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSC 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 EGISKSYVFRGTKDLSAKQLQEMLGLSK--VPVTQATRGPQVQQPP-PSNRFLQPVQKID :::::::::::::::.:::.:.::::.: .:. :: : : :. : :.::::::.::: CCDS13 EGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQA-RPAQPQEHPFASSRFLQPVHKID 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 MNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQG ::::::::::::::::: ::::::::.:::::::::::: ::::::::::.: ::: ::: CCDS13 MNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQG 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 PGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGL :::::::::: ::::::::.::::...::.:::.: ::::.:..:: ::::::::::::: CCDS13 PGMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGL 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE6 LEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKIS :::::: ::::::::::::::::::::::::.::::..:.:.:.::.::..:::::.::. CCDS13 LEMKCCANLTGGYMVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIA 360 370 380 390 400 410 420 430 440 450 460 470 pF1KE6 GAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRG :::::::::: :::::::::.:.::: :::::::.::.::.::::::::::.:::::::: CCDS13 GAIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRG 420 430 440 450 460 470 480 490 500 510 520 530 pF1KE6 AIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETE ::::::.::::: :::::::::::::::.:.:...: :.:::::::.:::::...:::.: CCDS13 AIQFVTHYQHSSTQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESE 480 490 500 510 520 530 540 550 560 570 580 590 pF1KE6 EGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSP :::::::::::::::::::::.:.:.::.:::.:..:::::::::::::: ::::::::: CCDS13 EGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSP 540 550 560 570 580 590 600 610 620 630 640 650 pF1KE6 DESSYYRHHFMRQDLTQSLIMIQPIMYAYSFSGPPEPVLLDSSSILADRILLMDTFFQIL :::::::::: ::::::::::::::.:.::: :::::::::::::::::::::::::::. CCDS13 DESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIV 600 610 620 630 640 650 660 670 680 690 700 710 pF1KE6 IYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARF :: :::::::::.:::::::::::.::::::.:::::::..::::::::.:::::::::: CCDS13 IYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARF 660 670 680 690 700 710 720 730 740 750 760 pF1KE6 LLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA :::::::::::::.::::::.:::::::::::::::::::::::::: CCDS13 LLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC 720 730 740 750 760 765 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:42:28 2016 done: Tue Nov 8 15:42:29 2016 Total Scan time: 2.280 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]