Result of FASTA (ccds) for
pFN21AE6709
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6709, 713 aa
1>>>pF1KE6709 713 - 713 aa - 713 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4844+/-0.000952; mu= 18.7928+/- 0.057
mean_var=70.3124+/-13.614, 0's: 0 Z-trim(105.1): 19 B-trim: 0 in 0/51
Lambda= 0.152953
statistics sampled from 8229 (8236) to 8229 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.253), width: 16
Scan time: 2.820
The best scores are: opt bits E(32554)
CCDS9303.1 MIPEP gene_id:4285|Hs108|chr13 ( 713) 4783 1065.1 0
CCDS12095.1 THOP1 gene_id:7064|Hs108|chr19 ( 689) 644 151.8 3.3e-36
CCDS3989.1 NLN gene_id:57486|Hs108|chr5 ( 704) 631 148.9 2.4e-35
>>CCDS9303.1 MIPEP gene_id:4285|Hs108|chr13 (713 aa)
initn: 4783 init1: 4783 opt: 4783 Z-score: 5699.4 bits: 1065.1 E(32554): 0
Smith-Waterman score: 4783; 99.9% identity (100.0% similar) in 713 aa overlap (1-713:1-713)
10 20 30 40 50 60
pF1KE6 MLCVGRLGGLGARAAALPPRRAGRGSLEAGIRARRVSTSWSPVGAAFNVKPQGSRLDLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MLCVGRLGGLGARAAALPPRRAGRGSLEAGIRARRVSTSWSPVGAAFNVKPQGSRLDLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 ERRGLFGVPELSAPEGFHIAQEKALRKTELLVDRACSTPPGPQTVLIFDELSDSLCRVAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ERRGLFGVPELSAPEGFHIAQEKALRKTELLVDRACSTPPGPQTVLIFDELSDSLCRVAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LADFVKIAHPEPAFREAAEEACRSIGTMVEKLNTNVDLYQSLQKLLADKKLVDSLDPETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LADFVKIAHPEPAFREAAEEACRSIGTMVEKLNTNVDLYQSLQKLLADKKLVDSLDPETR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 RVAELFMFDFEISGIHLDKEKRKRAVDLNVKILDLSSTFLMGTNFPNKIEKHLLPEHIRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 RVAELFMFDFEISGIHLDKEKRKRAVDLNVKILDLSSTFLMGTNFPNKIEKHLLPEHIRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 NFTSAGDHIIIDGLHAESPDDLVREAAYKIFLYPNAGQLKCLEELLSSRDLLAKLVGYST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NFTSAGDHIIIDGLHAESPDDLVREAAYKIFLYPNAGQLKCLEELLSSRDLLAKLVGYST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 FSHRALQGTIAKNPETVMQFLEKLSDKLSERTLKDFEMIRGMKMKLNPQNSEVMPWDPPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 FSHRALQGTIAKNPETVMQFLEKLSDKLSERTLKDFEMIRGMKMKLNPQNSEVMPWDPPY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 YSGVIRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSEDVRKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 YSGVIRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSEDVRKL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 AVVHESEGLLGYIYCDFFQRADKPHQDCHFTIRGGRLKEDGDYQLPVVVLMLNLPRSSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 AVVHESEGLLGYIYCDFFQRADKPHQDCHFTIRGGRLKEDGDYQLPVVVLMLNLPRSSRS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 SPTLLTPGMMENLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFANDYRVV
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SPTLLTPSMMENLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFANDYRVV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 NQFARHYQTGQPLPKNMVSRLCESKKVCAAADMQLQVFYATLDQIYHGKHPLRNSTTDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NQFARHYQTGQPLPKNMVSRLCESKKVCAAADMQLQVFYATLDQIYHGKHPLRNSTTDIL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE6 KETQEKFYGLPYVPNTAWQLRFSHLVGYGARYYSYLMSRAVASMVWKECFLQDPFNRAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 KETQEKFYGLPYVPNTAWQLRFSHLVGYGARYYSYLMSRAVASMVWKECFLQDPFNRAAG
610 620 630 640 650 660
670 680 690 700 710
pF1KE6 ERYRREMLAHGGGREPMLMVEGMLQKCPSVDDFVSALVSDLDLDFETFLMDSE
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ERYRREMLAHGGGREPMLMVEGMLQKCPSVDDFVSALVSDLDLDFETFLMDSE
670 680 690 700 710
>>CCDS12095.1 THOP1 gene_id:7064|Hs108|chr19 (689 aa)
initn: 542 init1: 292 opt: 644 Z-score: 763.6 bits: 151.8 E(32554): 3.3e-36
Smith-Waterman score: 714; 27.5% identity (58.5% similar) in 607 aa overlap (120-694:80-672)
90 100 110 120 130 140
pF1KE6 LLVDRACSTPPGPQTVLIFDELSDSLCRVADLADFVKIAHPEPAFREAAEEACRSIGTMV
.. :: . . : .: :. :: .... .
CCDS12 QVGTQEFEDVSYESTLKALADVEVTYTVQRNILDFPQHVSPSKDIRTASTEADKKLSEFD
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE6 EKLNTNVDLYQSLQKLLADKKLVDSLDPETRRVAELFMFDFEISGIHLDKE--------K
... :.:: . : .: ::: ::. : : .. . .:.:: .: :
CCDS12 VEMSMREDVYQRIV-WLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKRIK
110 120 130 140 150 160
210 220 230 240
pF1KE6 RKRA---VDLNVKILDLSSTFL------MG---TNFPNKIEKHLLPEHIRRNFTSAGDHI
.: . .:.: : :. ..::: .: .: :..:: : . . : :
CCDS12 KKLSLLCIDFN-KNLNEDTTFLPFTLQELGGLPEDFLNSLEKM---EDGKLKVTLKYPHY
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE6 --IIDGLHAESPDDLVREAAYKIFLYPNAGQLKCLEELLSSRDLLAKLVGYSTFSHRALQ
.. :. :.:: : . :: ::.. : ..:.:. : . .:.
CCDS12 FPLLKKCHVPETRRKVEEAFNCRCKEENCAILK---ELVTLRAQKSRLLGFHTHADYVLE
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE6 GTIAKNPETVMQFLEKLSDKLS-----ERTLKDFEMIRGMKMKLN-PQNSEVMPWDPPYY
..::. .:: ::..:..::. ::.. .:. :. . . : .... :: ::
CCDS12 MNMAKTSQTVATFLDELAQKLKPLGEQERAVI-LELKRAECERRGLPFDGRIRAWDMRYY
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE6 SGVIRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSEDVRKLA
. .. :: .. .: .: . . .:: . ..:::.... :. :.. : :::: .
CCDS12 MNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEGASA--WHEDVRLYT
350 360 370 380 390
430 440 450 460 470
pF1KE6 VVHESEG-LLGYIYCDFFQRADK-PHQDCHFTIRGGRLKEDGDYQLPVVVLMLNLPRSSR
. . : ..: .: :.. : : : : : .. : :..::. :. ..... :. . .
CCDS12 ARDAASGEVVGKFYLDLYPREGKYGHAAC-FGLQPGCLRQDGSRQIAIAAMVANFTKPTA
400 410 420 430 440 450
480 490 500 510 520 530
pF1KE6 SSPTLLTPGMMENLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFANDYRV
..:.:: .:. :::.::.::.. ..... .::. ::.:.:: ..: .. . .
CCDS12 DAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAMFSGTHVERDFVEAPSQMLENWVWEQEP
460 470 480 490 500 510
540 550 560 570 580 590
pF1KE6 VNQFARHYQTGQPLPKNMVSRLCESKKVCAAADMQLQVFYATLDQIYHGKHPLRNSTTDI
. ...:::.::. .:.... .: ::... .. :. : .:: : . . . .
CCDS12 LLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDA-DPAEEY
520 530 540 550 560 570
600 610 620 630 640 650
pF1KE6 LKETQEKFYGLPYVPNTAWQLRFSHLVG-YGARYYSYLMSRAVASMVWKECFLQDP-FNR
. :: . :.: .:.: :.::.: : :.::.:: :.. . ... : :. .:
CCDS12 ARLCQE-ILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNS
580 590 600 610 620 630
660 670 680 690 700 710
pF1KE6 AAGERYRREMLAHGGGREPMLMVEGMLQKCPSVDDFVSALVSDLDLDFETFLMDSE
.: :: .: ::... :.. .: . :. : :.
CCDS12 KVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAFLLSKGLQVGGCEPEPQVC
640 650 660 670 680
>>CCDS3989.1 NLN gene_id:57486|Hs108|chr5 (704 aa)
initn: 515 init1: 271 opt: 631 Z-score: 747.9 bits: 148.9 E(32554): 2.4e-35
Smith-Waterman score: 659; 26.9% identity (56.0% similar) in 605 aa overlap (121-694:105-696)
100 110 120 130 140 150
pF1KE6 LVDRACSTPPGPQTVLIFDELSDSLCRVADLADFVKIAHPEPAFREAAEEACRSIGTMVE
. :: . . . : :. :: . .. .
CCDS39 VGMLGIEEVTYENCLQALADVEVKYIVERTMLDFPQHVSSDKEVRAASTEADKRLSRFDI
80 90 100 110 120 130
160 170 180 190 200
pF1KE6 KLNTNVDLYQSLQKLLADKKLVDSLDPETRRVAELFMFDFEISGIHLD-------KEKRK
... :... . .: : .. ::.:: : . . .:.:: : .:
CCDS39 EMSMRGDIFERIVHLQETCDL-GKIKPEARRYLEKSIKMGKRNGLHLPEQVQNEIKSMKK
140 150 160 170 180 190
210 220 230 240 250
pF1KE6 RAVDLNV---KILDLSSTFLMGTNFPNKIEKHLLPEHIRRNFTSAGD---HIIIDGLHAE
: .: . : :. ..:::. : .: : ::. . .. .. : .: . :
CCDS39 RMSELCIDFNKNLNEDDTFLV---F-SKAELGALPDDFIDSLEKTDDDKYKITLKYPHYF
200 210 220 230 240
260 270 280 290 300
pF1KE6 S--PDDLVREAAYKIFLYPNAGQLKCLEE-------LLSSRDLLAKLVGYSTFSHRALQG
. :. .. . :. .: :: :: : .:::.:::: . .:.
CCDS39 PVMKKCCIPETRRRMEMAFNT---RCKEENTIILQQLLPLRTKVAKLLGYSTHADFVLEM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 TIAKNPETVMQFLEKLSDKLSERTLKDFEMIRGMKMKLNPQ-----NSEVMPWDPPYYSG
. ::. : ::. ::.::. . :.: ..: : . .... :: ::
CCDS39 NTAKSTSRVTAFLDDLSQKLKPLGEAEREFILNLKKKECKDRGFEYDGKINAWDLYYYMT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 VIRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSEDVRKLAVV
. .:.:. . .: . . ::: ..:::.:. :: . ..::...: .:
CCDS39 QTEELKYSIDQEFLKEYFPIEVVTEGLLNTYQELLGLSF--EQMTDAHVWNKSVTLYTVK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 HESEG-LLGYIYCDFFQRADK-PHQDCHFTIRGGRLKEDGDYQLPVVVLMLNLPRSSRSS
.. : .:: .: :.. : : : : : .. : : ::. .. :..:..:. . .
CCDS39 DKATGEVLGQFYLDLYPREGKYNHAAC-FGLQPGCLLPDGSRMMAVAALVVNFSQPVAGR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 PTLLTPGMMENLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFANDYRVVN
:.:: ... :::.::.::.. ..: . . .:: :::.:::: ..: .. : .
CCDS39 PSLLRHDEVRTYFHEFGHVMHQICAQTDFARFSGTNVETDFVEVPSQMLENWVWDVDSLR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 QFARHYQTGQPLPKNMVSRLCESKKVCAAADMQLQVFYATLDQIYHGKHPLRNSTTDILK
....::. :.:. ... .: :. : .. :. . .:: : . : ..... :
CCDS39 RLSKHYKDGSPIADDLLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNTSL-DAASEYAK
550 560 570 580 590 600
610 620 630 640 650
pF1KE6 ETQEKFYGLPYVPNTAWQLRFSHLVG-YGARYYSYLMSRAVASMVWKECFLQDPF-NRAA
.: . :. .:.: :.::.: : ..::.:: :.. . .. :: .. . : .
CCDS39 YCSE-ILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFYSCFKKEGIMNPEV
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE6 GERYRREMLAHGGGREPMLMVEGMLQKCPSVDDFVSALVSDLDLDFETFLMDSE
: .:: .: ::. . : :....:.. :. :.
CCDS39 GMKYRNLILKPGGSLDGMDMLHNFLKREPNQKAFLMSRGLHAP
670 680 690 700
713 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:35:16 2016 done: Tue Nov 8 15:35:16 2016
Total Scan time: 2.820 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]