FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6685, 229 aa
  1>>>pF1KE6685 229 - 229 aa - 229 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1529+/-0.000844; mu= 15.1006+/- 0.051
 mean_var=69.4024+/-13.883, 0's: 0 Z-trim(107.4): 36  B-trim: 431 in 2/49
 Lambda= 0.153953
 statistics sampled from 9542 (9571) to 9542 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.294), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS11655.1 CD79B gene_id:974|Hs108|chr17          ( 229) 1537 350.1   7e-97
CCDS42372.1 CD79B gene_id:974|Hs108|chr17          ( 230) 1525 347.4 4.5e-96
CCDS11656.1 CD79B gene_id:974|Hs108|chr17          ( 125)  552 131.1 3.1e-31


>>CCDS11655.1 CD79B gene_id:974|Hs108|chr17               (229 aa)
 initn: 1537 init1: 1537 opt: 1537  Z-score: 1852.8  bits: 350.1 E(32554): 7e-97
Smith-Waterman score: 1537; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KE6 MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGFT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 FCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLL
              130       140       150       160       170       180

              190       200       210       220         
pF1KE6 LDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
              190       200       210       220         

>>CCDS42372.1 CD79B gene_id:974|Hs108|chr17               (230 aa)
 initn: 1414 init1: 1414 opt: 1525  Z-score: 1838.3  bits: 347.4 E(32554): 4.5e-96
Smith-Waterman score: 1525; 99.6% identity (99.6% similar) in 230 aa overlap (1-229:1-230)

               10        20         30        40        50         
pF1KE6 MARLALSPVPSHWMVALLLLLSA-EPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS42 MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE6 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE6 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
              130       140       150       160       170       180

     180       190       200       210       220         
pF1KE6 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
              190       200       210       220       230

>>CCDS11656.1 CD79B gene_id:974|Hs108|chr17               (125 aa)
 initn: 552 init1: 552 opt: 552  Z-score: 674.2  bits: 131.1 E(32554): 3.1e-31
Smith-Waterman score: 592; 54.6% identity (54.6% similar) in 229 aa overlap (1-229:1-125)

               10        20        30        40        50        60
pF1KE6 MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGFT
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS11 MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKG--------------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KE6 VKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIY
                                                                   
CCDS11 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KE6 FCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLL
                               ::::::::::::::::::::::::::::::::::::
CCDS11 ------------------------FSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLL
                                       50        60        70      

              190       200       210       220         
pF1KE6 LDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
         80        90       100       110       120     




229 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:24:17 2016 done: Tue Nov  8 15:24:17 2016
 Total Scan time:  2.060 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]