FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6684, 340 aa
  1>>>pF1KE6684 340 - 340 aa - 340 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5449+/-0.000824; mu= 14.1616+/- 0.049
 mean_var=61.7324+/-12.293, 0's: 0 Z-trim(106.7): 21  B-trim: 0 in 0/48
 Lambda= 0.163237
 statistics sampled from 9142 (9149) to 9142 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.281), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS3097.1 A4GNT gene_id:51146|Hs108|chr3          ( 340) 2358 563.8 6.9e-161
CCDS14041.1 A4GALT gene_id:53947|Hs108|chr22       ( 353)  716 177.2 1.8e-44


>>CCDS3097.1 A4GNT gene_id:51146|Hs108|chr3               (340 aa)
 initn: 2358 init1: 2358 opt: 2358  Z-score: 3001.9  bits: 563.8 E(32554): 6.9e-161
Smith-Waterman score: 2358; 99.7% identity (99.7% similar) in 340 aa overlap (1-340:1-340)

               10        20        30        40        50        60
pF1KE6 MRKELQLSLSVTLLLVCGFLYQFTLKSSCLFCLPSFKSHQGLEALLSHRRGIVFLETSER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MRKELQLSLSVTLLLVCGFLYQFTLKSSCLFCLPSFKSHQGLEALLSHRRGIVFLETSER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 MEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAIDNVFLFPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAIDNVFLFPLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 MKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVISIRPIPEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVISIRPIPEEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FLAAQASRYSSNGIFGFLPHHPFLWECMENFVEHYNSDIWGNQGPELMTRMLRVWCKLED
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS30 FLAAQASRYSSNGIFGFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTRMLRVWCKLED
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 FQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPSFNVSYALHLWNHMNQEGRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPSFNVSYALHLWNHMNQEGRAV
              250       260       270       280       290       300

              310       320       330       340
pF1KE6 IRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPGNK
       ::::::::::::::::::::::::::::::::::::::::
CCDS30 IRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPGNK
              310       320       330       340

>>CCDS14041.1 A4GALT gene_id:53947|Hs108|chr22            (353 aa)
 initn: 597 init1: 254 opt: 716  Z-score: 911.8  bits: 177.2 E(32554): 1.8e-44
Smith-Waterman score: 716; 38.4% identity (66.7% similar) in 315 aa overlap (18-323:50-349)

                            10        20         30        40      
pF1KE6              MRKELQLSLSVTLLLVCGFLYQFTLKSSC-LFCLPSFKSHQGLEALL
                                     : ::..  .  :  .  :.  ::    .  
CCDS14 VCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIPCPTLTPPTPPSHGPTPG--
      20        30        40        50        60        70         

         50        60        70        80        90       100      
pF1KE6 SHRRGIVFLETSERMEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYP---
           .: :::::.: .:  :  :::::::. .::  :. .::::  .     :.. :   
CCDS14 ----NIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG-----NASLPRHL
            80        90       100       110       120             

           110       120       130       140       150       160   
pF1KE6 AFSFLSAIDNVFLFPLDMKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGG
       ..:.:: . :: ..:::...:..:::: .::  ...  :   : . :::::.:..::.::
CCDS14 GISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGG
      130       140       150       160       170       180        

           170        180       190        200       210       220 
pF1KE6 IYMDTDVISIRPIPE-ENFLAAQASRYSSNGIF-GFLPHHPFLWECMENFVEHYNSDIWG
       ::.::: : .. . .  : :..: :::  :: : .:  .: :.  ::..::.:::. :::
CCDS14 IYLDTDFIVLKNLRNLTNVLGTQ-SRYVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWG
      190       200       210        220       230       240       

             230       240       250       260       270           
pF1KE6 NQGPELMTRMLRVWCKLEDFQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTE--P
       .:::.:.::... ::..... :     : ... : :. :::: ...:..:.:  . :  :
CCDS14 HQGPQLLTRVFKKWCSIRSLAESRA--CRGVTTLPPEAFYPIPWQDWKKYFEDINPEELP
       250       260       270         280       290       300     

     280        290       300       310       320       330        
pF1KE6 SF-NVSYALHLWNHMNQEGRAVIRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPG
        . ...::.:.::. .: :      : .:. .:. ..:: :.. .               
CCDS14 RLLSATYAVHVWNKKSQ-GTRFEATSRALLAQLHARYCPTTHEAMKMYL           
         310       320        330       340       350              

      340
pF1KE6 NK




340 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:23:42 2016 done: Tue Nov  8 15:23:43 2016
 Total Scan time:  1.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]