FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6680, 338 aa
  1>>>pF1KE6680 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4321+/-0.000858; mu= 14.8004+/- 0.052
 mean_var=58.0519+/-11.902, 0's: 0 Z-trim(103.9): 23  B-trim: 417 in 1/52
 Lambda= 0.168332
 statistics sampled from 7642 (7649) to 7642 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.235), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS6712.1 FBP1 gene_id:2203|Hs108|chr9            ( 338) 2214 546.1 1.5e-155
CCDS6711.1 FBP2 gene_id:8789|Hs108|chr9            ( 339) 1738 430.5 9.4e-121


>>CCDS6712.1 FBP1 gene_id:2203|Hs108|chr9                 (338 aa)
 initn: 2214 init1: 2214 opt: 2214  Z-score: 2906.2  bits: 546.1 E(32554): 1.5e-155
Smith-Waterman score: 2214; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KE6 MADQAPFDTDVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MADQAPFDTDVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 AGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYARDFDPAVTEYIQRKKFPPDNSAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYARDFDPAVTEYIQRKKFPPDNSAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 YGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 YGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGK
              250       260       270       280       290       300

              310       320       330        
pF1KE6 EAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHSAQ
       ::::::::::::::::::::::::::::::::::::::
CCDS67 EAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHSAQ
              310       320       330        

>>CCDS6711.1 FBP2 gene_id:8789|Hs108|chr9                 (339 aa)
 initn: 1744 init1: 1721 opt: 1738  Z-score: 2281.4  bits: 430.5 E(32554): 9.4e-121
Smith-Waterman score: 1738; 76.9% identity (92.9% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KE6 MADQAPFDTDVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGI
       :.:..::.::. ::::.:::.::.:.:::::::::::. ::.:::::::::::.::::::
CCDS67 MTDRSPFETDMLTLTRYVMEKGRQAKGTGELTQLLNSMLTAIKAISSAVRKAGLAHLYGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDP
       :::.:::::.:::::::::.::.::..::..::::::::.: :::.  ::::::::::::
CCDS67 AGSVNVTGDEVKKLDVLSNSLVINMVQSSYSTCVLVSEENKDAIITAKEKRGKYVVCFDP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDC
       ::::::::::.:.::::.:::: : :::::::::: :::.::::::::::::...:.   
CCDS67 LDGSSNIDCLASIGTIFAIYRKTSEDEPSEKDALQCGRNIVAAGYALYGSATLVALSTGQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYARDFDPAVTEYIQRKKFPPDNSAP
       ::. ::::::.:::.::.:::::::::::::::::::. :: :.:::.:.:::: :.:::
CCDS67 GVDLFMLDPALGEFVLVEKDVKIKKKGKIYSLNEGYAKYFDAATTEYVQKKKFPEDGSAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 YGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGK
       ::::::::::::::::::::::::::::.:::.:::::::::::.::..:.:::.:::: 
CCDS67 YGARYVGSMVADVHRTLVYGGIFLYPANQKSPKGKLRLLYECNPVAYIIEQAGGLATTGT
              250       260       270       280       290       300

              310       320       330         
pF1KE6 EAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHSAQ 
       . :::: :  ::::.:.:::::.:: :.:   .:..:  
CCDS67 QPVLDVKPEAIHQRVPLILGSPEDVQEYLTCVQKNQAGS
              310       320       330         




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:21:34 2016 done: Tue Nov  8 15:21:34 2016
 Total Scan time:  2.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]