FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6672, 307 aa
  1>>>pF1KE6672 307 - 307 aa - 307 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6183+/-0.000924; mu= 13.1236+/- 0.055
 mean_var=56.8323+/-11.573, 0's: 0 Z-trim(104.4): 23  B-trim: 452 in 1/49
 Lambda= 0.170128
 statistics sampled from 7882 (7884) to 7882 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.242), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS33299.1 KYNU gene_id:8942|Hs108|chr2           ( 307) 2062 514.4 4.4e-146
CCDS2183.1 KYNU gene_id:8942|Hs108|chr2            ( 465) 2022 504.6 5.9e-143


>>CCDS33299.1 KYNU gene_id:8942|Hs108|chr2                (307 aa)
 initn: 2062 init1: 2062 opt: 2062  Z-score: 2736.2  bits: 514.4 E(32554): 4.4e-146
Smith-Waterman score: 2062; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KE6 MEPSSLELPADTVQRIAAELKCHPTDERVALHLDEEDKLRHFRECFYIPKIQDLPPVDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MEPSSLELPADTVQRIAAELKCHPTDERVALHLDEEDKLRHFRECFYIPKIQDLPPVDLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 QAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKP
              250       260       270       280       290       300

              
pF1KE6 ARSEFFN
       :::::::
CCDS33 ARSEFFN
              

>>CCDS2183.1 KYNU gene_id:8942|Hs108|chr2                 (465 aa)
 initn: 2021 init1: 2021 opt: 2022  Z-score: 2680.0  bits: 504.6 E(32554): 5.9e-143
Smith-Waterman score: 2022; 98.7% identity (99.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KE6 MEPSSLELPADTVQRIAAELKCHPTDERVALHLDEEDKLRHFRECFYIPKIQDLPPVDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MEPSSLELPADTVQRIAAELKCHPTDERVALHLDEEDKLRHFRECFYIPKIQDLPPVDLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 QAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 QAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKP
              250       260       270       280       290       300

                                                                   
pF1KE6 ARSEFFN                                                     
       :   .:                                                      
CCDS21 ALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKK
              310       320       330       340       350       360




307 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:18:13 2016 done: Tue Nov  8 15:18:14 2016
 Total Scan time:  2.180 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]