FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6667, 298 aa
  1>>>pF1KE6667 298 - 298 aa - 298 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9304+/-0.000773; mu= 13.5323+/- 0.047
 mean_var=90.1362+/-17.601, 0's: 0 Z-trim(110.2): 12  B-trim: 4 in 1/52
 Lambda= 0.135090
 statistics sampled from 11431 (11435) to 11431 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.351), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS81836.1 TDP1 gene_id:55775|Hs108|chr14         ( 578) 2019 403.2 2.3e-112
CCDS9888.1 TDP1 gene_id:55775|Hs108|chr14          ( 608) 2019 403.3 2.4e-112


>>CCDS81836.1 TDP1 gene_id:55775|Hs108|chr14              (578 aa)
 initn: 2019 init1: 2019 opt: 2019  Z-score: 2130.8  bits: 403.2 E(32554): 2.3e-112
Smith-Waterman score: 2019; 99.3% identity (99.3% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KE6 MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA
              190       200       210       220       230       240

              250       260       270       280       290          
pF1KE6 QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGTHL  
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::  :  
CCDS81 QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSP
              250       260       270       280       290       300

CCDS81 LYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG
              310       320       330       340       350       360

>>CCDS9888.1 TDP1 gene_id:55775|Hs108|chr14               (608 aa)
 initn: 2019 init1: 2019 opt: 2019  Z-score: 2130.5  bits: 403.3 E(32554): 2.4e-112
Smith-Waterman score: 2019; 99.3% identity (99.3% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KE6 MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 DGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA
              190       200       210       220       230       240

              250       260       270       280       290          
pF1KE6 QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGTHL  
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::  :  
CCDS98 QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSP
              250       260       270       280       290       300

CCDS98 LYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG
              310       320       330       340       350       360




298 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:15:31 2016 done: Tue Nov  8 15:15:32 2016
 Total Scan time:  2.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]