FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6666, 290 aa
  1>>>pF1KE6666 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2823+/-0.000863; mu= 15.1211+/- 0.051
 mean_var=59.6192+/-12.026, 0's: 0 Z-trim(105.1): 16  B-trim: 148 in 1/51
 Lambda= 0.166104
 statistics sampled from 8227 (8232) to 8227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS6008.1 NAT2 gene_id:10|Hs108|chr8              ( 290) 1936 472.3 1.8e-133
CCDS6007.1 NAT1 gene_id:9|Hs108|chr8               ( 290) 1594 390.4 8.5e-109
CCDS55205.1 NAT1 gene_id:9|Hs108|chr8              ( 352) 1594 390.4  1e-108


>>CCDS6008.1 NAT2 gene_id:10|Hs108|chr8                   (290 aa)
 initn: 1936 init1: 1936 opt: 1936  Z-score: 2509.7  bits: 472.3 E(32554): 1.8e-133
Smith-Waterman score: 1936; 99.3% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KE6 MDIEAYFERIGYKNSRNKLDLETLTDILEHQIRAVPFENLNMHCGQAMELGLEAIFDHIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MDIEAYFERIGYKNSRNKLDLETLTDILEHQIRAVPFENLNMHCGQAMELGLEAIFDHIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RRNRGGWCLQVNQLLYWALTTIGFQTTMLGGYFYIPPVNKYSTGMVHLLLQVTIDGRNYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RRNRGGWCLQVNQLLYWALTTIGFQTTMLGGYFYIPPVNKYSTGMVHLLLQVTIDGRNYI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VDAGSGSSSQMWQPLELISGKDQPQVPCIFCLTEERGIWYLDQIRREQYITNKEFLNSHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VDAGSGSSSQMWQPLELISGKDQPQVPCIFCLTEERGIWYLDQIRREQYITNKEFLNSHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LPKKKHQKIYLFTLEPQTIEDFESMNTYLQTSPTSSFITTSFCSLQTPEGVYCLVGFILT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS60 LPKKKHQKIYLFTLEPRTIEDFESMNTYLQTSPTSSFITTSFCSLQTPEGVYCLVGFILT
              190       200       210       220       230       240

              250       260       270       280       290
pF1KE6 YRKFNYKDNTDLVEFKTLTEEEVEEVLKNIFKISLGRNLVPKPGDGSLTI
       :::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS60 YRKFNYKDNTDLVEFKTLTEEEVEEVLRNIFKISLGRNLVPKPGDGSLTI
              250       260       270       280       290

>>CCDS6007.1 NAT1 gene_id:9|Hs108|chr8                    (290 aa)
 initn: 1594 init1: 1594 opt: 1594  Z-score: 2066.8  bits: 390.4 E(32554): 8.5e-109
Smith-Waterman score: 1594; 80.7% identity (92.8% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KE6 MDIEAYFERIGYKNSRNKLDLETLTDILEHQIRAVPFENLNMHCGQAMELGLEAIFDHIV
       ::::::.::::::.::::::::::::::.::::::::::::.:::.::.::::::::..:
CCDS60 MDIEAYLERIGYKKSRNKLDLETLTDILQHQIRAVPFENLNIHCGDAMDLGLEAIFDQVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RRNRGGWCLQVNQLLYWALTTIGFQTTMLGGYFYIPPVNKYSTGMVHLLLQVTIDGRNYI
       ::::::::::::.:::::::::::.::::::: :  :..::::::.::::::::::::::
CCDS60 RRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGRNYI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VDAGSGSSSQMWQPLELISGKDQPQVPCIFCLTEERGIWYLDQIRREQYITNKEFLNSHL
       :::: : : :::::::::::::::::::.: :::: :.:::::::::::: :.:::.: :
CCDS60 VDAGFGRSYQMWQPLELISGKDQPQVPCVFRLTEENGFWYLDQIRREQYIPNEEFLHSDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LPKKKHQKIYLFTLEPQTIEDFESMNTYLQTSPTSSFITTSFCSLQTPEGVYCLVGFILT
       :  .:..::: :::.:.::::::::::::::::.: : . ::::::::.::.::::: ::
CCDS60 LEDSKYRKIYSFTLKPRTIEDFESMNTYLQTSPSSVFTSKSFCSLQTPDGVHCLVGFTLT
              190       200       210       220       230       240

              250       260       270       280       290
pF1KE6 YRKFNYKDNTDLVEFKTLTEEEVEEVLKNIFKISLGRNLVPKPGDGSLTI
       .:.:::::::::.:::::.:::.:.::::::.::: :.:::: ::  .::
CCDS60 HRRFNYKDNTDLIEFKTLSEEEIEKVLKNIFNISLQRKLVPKHGDRFFTI
              250       260       270       280       290

>>CCDS55205.1 NAT1 gene_id:9|Hs108|chr8                   (352 aa)
 initn: 1594 init1: 1594 opt: 1594  Z-score: 2065.4  bits: 390.4 E(32554): 1e-108
Smith-Waterman score: 1594; 80.7% identity (92.8% similar) in 290 aa overlap (1-290:63-352)

                                             10        20        30
pF1KE6                               MDIEAYFERIGYKNSRNKLDLETLTDILEH
                                     ::::::.::::::.::::::::::::::.:
CCDS55 SGIQARKKQQSVFWIKTEDQPTFNLLRKGIMDIEAYLERIGYKKSRNKLDLETLTDILQH
             40        50        60        70        80        90  

               40        50        60        70        80        90
pF1KE6 QIRAVPFENLNMHCGQAMELGLEAIFDHIVRRNRGGWCLQVNQLLYWALTTIGFQTTMLG
       :::::::::::.:::.::.::::::::..:::::::::::::.:::::::::::.:::::
CCDS55 QIRAVPFENLNIHCGDAMDLGLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLG
            100       110       120       130       140       150  

              100       110       120       130       140       150
pF1KE6 GYFYIPPVNKYSTGMVHLLLQVTIDGRNYIVDAGSGSSSQMWQPLELISGKDQPQVPCIF
       :: :  :..::::::.:::::::::::::::::: : : :::::::::::::::::::.:
CCDS55 GYVYSTPAKKYSTGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQVPCVF
            160       170       180       190       200       210  

              160       170       180       190       200       210
pF1KE6 CLTEERGIWYLDQIRREQYITNKEFLNSHLLPKKKHQKIYLFTLEPQTIEDFESMNTYLQ
        :::: :.:::::::::::: :.:::.: ::  .:..::: :::.:.:::::::::::::
CCDS55 RLTEENGFWYLDQIRREQYIPNEEFLHSDLLEDSKYRKIYSFTLKPRTIEDFESMNTYLQ
            220       230       240       250       260       270  

              220       230       240       250       260       270
pF1KE6 TSPTSSFITTSFCSLQTPEGVYCLVGFILTYRKFNYKDNTDLVEFKTLTEEEVEEVLKNI
       :::.: : . ::::::::.::.::::: ::.:.:::::::::.:::::.:::.:.:::::
CCDS55 TSPSSVFTSKSFCSLQTPDGVHCLVGFTLTHRRFNYKDNTDLIEFKTLSEEEIEKVLKNI
            280       290       300       310       320       330  

              280       290
pF1KE6 FKISLGRNLVPKPGDGSLTI
       :.::: :.:::: ::  .::
CCDS55 FNISLQRKLVPKHGDRFFTI
            340       350  




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:14:57 2016 done: Tue Nov  8 15:14:57 2016
 Total Scan time:  2.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]