Result of FASTA (ccds) for
pFN21AE6665
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6665, 290 aa
1>>>pF1KE6665 290 - 290 aa - 290 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8578+/-0.000918; mu= 8.2090+/- 0.055
mean_var=96.5806+/-19.042, 0's: 0 Z-trim(107.6): 13 B-trim: 0 in 0/51
Lambda= 0.130506
statistics sampled from 9662 (9668) to 9662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.297), width: 16
Scan time: 2.050
The best scores are: opt bits E(32554)
CCDS47877.1 GDAP1 gene_id:54332|Hs108|chr8 ( 290) 1902 368.2 4e-102
CCDS34911.1 GDAP1 gene_id:54332|Hs108|chr8 ( 358) 1902 368.2 4.8e-102
CCDS74727.1 GDAP1L1 gene_id:78997|Hs108|chr20 ( 278) 1022 202.5 2.9e-52
CCDS13328.1 GDAP1L1 gene_id:78997|Hs108|chr20 ( 367) 1022 202.5 3.7e-52
CCDS74725.1 GDAP1L1 gene_id:78997|Hs108|chr20 ( 386) 895 178.6 6.1e-45
CCDS74726.1 GDAP1L1 gene_id:78997|Hs108|chr20 ( 296) 415 88.2 7.8e-18
>>CCDS47877.1 GDAP1 gene_id:54332|Hs108|chr8 (290 aa)
initn: 1902 init1: 1902 opt: 1902 Z-score: 1946.9 bits: 368.2 E(32554): 4e-102
Smith-Waterman score: 1902; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MRLNSTGEVPVLIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DSLPMDAYTHGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DSLPMDAYTHGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 QKRLKSKLLDHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QKRLKSKLLDHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 VSLAVTLHRLKFLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VSLAVTLHRLKFLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTA
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 FRVAKKRAPKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FRVAKKRAPKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF
250 260 270 280 290
>>CCDS34911.1 GDAP1 gene_id:54332|Hs108|chr8 (358 aa)
initn: 1902 init1: 1902 opt: 1902 Z-score: 1945.5 bits: 368.2 E(32554): 4.8e-102
Smith-Waterman score: 1902; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:69-358)
10 20 30
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE
::::::::::::::::::::::::::::::
CCDS34 KVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIICEATQIIDYLE
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET
220 230 240 250 260 270
220 230 240 250 260 270
pF1KE6 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM
280 290 300 310 320 330
280 290
pF1KE6 LFRKRLGSMILAFRPRPNYF
::::::::::::::::::::
CCDS34 LFRKRLGSMILAFRPRPNYF
340 350
>>CCDS74727.1 GDAP1L1 gene_id:78997|Hs108|chr20 (278 aa)
initn: 1046 init1: 616 opt: 1022 Z-score: 1051.8 bits: 202.5 E(32554): 2.9e-52
Smith-Waterman score: 1022; 55.4% identity (83.1% similar) in 278 aa overlap (1-275:1-276)
10 20 30 40 50 60
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELL
:::: ::::.:: .::: . :::::.:.:: :.. :::. :. . :: .:::::
CCDS74 MRLNLGEEVPVIIHRDNIISDYDQIIDYVERTFTGEHVVALMPEVGSLQHARVLQYRELL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 DSLPMDAYTHGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLA-EENPDLQEAYIA
:.:::::::::::::::::.::::: :::..:: ...:. ..: :: ::.:.:.: :..
CCDS74 DALPMDAYTHGCILHPELTTDSMIPKYATAEIRRHLANATTDLMKLDHEEEPQLSEPYLS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 KQKRLKSKLLDHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQP--WLCGESFT
:::.: .:.:.::.:.:::::: :: ::::.:.::..:. :. :::. :::: .::
CCDS74 KQKKLMAKILEHDDVSYLKKILGELAMVLDQIEAELEKRKLEN--EGQKCELWLCGCAFT
130 140 150 160 170
180 190 200 210 220 230
pF1KE6 LADVSLAVTLHRLKFLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVL
:::: :..:::::::::.... : .:.::::....::: .: .: :::: ... :.:::.
CCDS74 LADVLLGATLHRLKFLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDIHTTLLSAVI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE6 PTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF
:.:::..:.. :. .:.....: :.:.::::. ..:.
CCDS74 PNAFRLVKRKPPSFFGASFLMGSLGGMGYFAYWYLKKKYI
240 250 260 270
>>CCDS13328.1 GDAP1L1 gene_id:78997|Hs108|chr20 (367 aa)
initn: 1026 init1: 616 opt: 1022 Z-score: 1049.8 bits: 202.5 E(32554): 3.7e-52
Smith-Waterman score: 1022; 55.4% identity (83.1% similar) in 278 aa overlap (1-275:90-365)
10 20 30
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE
:::: ::::.:: .::: . :::::.:
CCDS13 KVRLVIAEKGLVCEERDVSLPQSEHKEPWFMRLNLGEEVPVIIHRDNIISDYDQIIDYVE
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
.:: :.. :::. :. . :: .::::::.:::::::::::::::::.::::: :::.
CCDS13 RTFTGEHVVALMPEVGSLQHARVLQYRELLDALPMDAYTHGCILHPELTTDSMIPKYATA
120 130 140 150 160 170
100 110 120 130 140
pF1KE6 RIRSQIGNTESELKKLA-EENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLD
.:: ...:. ..: :: ::.:.:.: :..:::.: .:.:.::.:.:::::: :: :::
CCDS13 EIRRHLANATTDLMKLDHEEEPQLSEPYLSKQKKLMAKILEHDDVSYLKKILGELAMVLD
180 190 200 210 220 230
150 160 170 180 190 200
pF1KE6 QVETELQRRNEETPEEGQQP--WLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPN
:.:.::..:. :. :::. :::: .:::::: :..:::::::::.... : .:.:::
CCDS13 QIEAELEKRKLEN--EGQKCELWLCGCAFTLADVLLGATLHRLKFLGLSKKYWEDGSRPN
240 250 260 270 280 290
210 220 230 240 250 260
pF1KE6 LETYYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYF
:....::: .: .: :::: ... :.:::.:.:::..:.. :. .:.....: :.:.:::
CCDS13 LQSFFERVQRRFAFRKVLGDIHTTLLSAVIPNAFRLVKRKPPSFFGASFLMGSLGGMGYF
300 310 320 330 340 350
270 280 290
pF1KE6 AFMLFRKRLGSMILAFRPRPNYF
:. ..:.
CCDS13 AYWYLKKKYI
360
>>CCDS74725.1 GDAP1L1 gene_id:78997|Hs108|chr20 (386 aa)
initn: 1013 init1: 616 opt: 895 Z-score: 920.3 bits: 178.6 E(32554): 6.1e-45
Smith-Waterman score: 975; 52.2% identity (77.4% similar) in 297 aa overlap (1-275:90-384)
10 20 30
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE
:::: ::::.:: .::: . :::::.:
CCDS74 KVRLVIAEKGLVCEERDVSLPQSEHKEPWFMRLNLGEEVPVIIHRDNIISDYDQIIDYVE
60 70 80 90 100 110
40 50 60 70
pF1KE6 QTFLDE---RTPR----------------LMPDKESMYYPRVQHYRELLDSLPMDAYTHG
.:: : : :::. :. . :: .::::::.:::::::::
CCDS74 RTFTGGGRGRCPSGFPAQPLAVPTEHVVALMPEVGSLQHARVLQYRELLDALPMDAYTHG
120 130 140 150 160 170
80 90 100 110 120 130
pF1KE6 CILHPELTVDSMIPAYATTRIRSQIGNTESELKKLA-EENPDLQEAYIAKQKRLKSKLLD
::::::::.::::: :::..:: ...:. ..: :: ::.:.:.: :..:::.: .:.:.
CCDS74 CILHPELTTDSMIPKYATAEIRRHLANATTDLMKLDHEEEPQLSEPYLSKQKKLMAKILE
180 190 200 210 220 230
140 150 160 170 180
pF1KE6 HDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQP--WLCGESFTLADVSLAVTLH
::.:.:::::: :: ::::.:.::..:. :. :::. :::: .:::::: :..:::
CCDS74 HDDVSYLKKILGELAMVLDQIEAELEKRKLEN--EGQKCELWLCGCAFTLADVLLGATLH
240 250 260 270 280 290
190 200 210 220 230 240
pF1KE6 RLKFLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRA
::::::.... : .:.::::....::: .: .: :::: ... :.:::.:.:::..:..
CCDS74 RLKFLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDIHTTLLSAVIPNAFRLVKRKP
300 310 320 330 340 350
250 260 270 280 290
pF1KE6 PKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF
:. .:.....: :.:.::::. ..:.
CCDS74 PSFFGASFLMGSLGGMGYFAYWYLKKKYI
360 370 380
>>CCDS74726.1 GDAP1L1 gene_id:78997|Hs108|chr20 (296 aa)
initn: 799 init1: 413 opt: 415 Z-score: 433.7 bits: 88.2 E(32554): 7.8e-18
Smith-Waterman score: 664; 42.9% identity (62.5% similar) in 275 aa overlap (1-275:90-294)
10 20 30
pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE
:::: ::::.:: .::: . :::::.:
CCDS74 KVRLVIAEKGLVCEERDVSLPQSEHKEPWFMRLNLGEEVPVIIHRDNIISDYDQIIDYVE
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT
.:: :.. :::. :. . :: .::::::.:::::::::::::::::.::::: :::.
CCDS74 RTFTGEHVVALMPEVGSLQHARVLQYRELLDALPMDAYTHGCILHPELTTDSMIPKYATA
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ
.:: : . ::
CCDS74 EIRRQ----KCEL-----------------------------------------------
180
160 170 180 190 200 210
pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET
:::: .:::::: :..:::::::::.... : .:.::::..
CCDS74 -------------------WLCGCAFTLADVLLGATLHRLKFLGLSKKYWEDGSRPNLQS
190 200 210 220
220 230 240 250 260 270
pF1KE6 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM
..::: .: .: :::: ... :.:::.:.:::..:.. :. .:.....: :.:.::::.
CCDS74 FFERVQRRFAFRKVLGDIHTTLLSAVIPNAFRLVKRKPPSFFGASFLMGSLGGMGYFAYW
230 240 250 260 270 280
280 290
pF1KE6 LFRKRLGSMILAFRPRPNYF
..:.
CCDS74 YLKKKYI
290
290 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:14:28 2016 done: Tue Nov 8 15:14:29 2016
Total Scan time: 2.050 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]