FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6656, 259 aa
  1>>>pF1KE6656 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1178+/-0.000713; mu= 12.5055+/- 0.043
 mean_var=107.2565+/-21.886, 0's: 0 Z-trim(112.8): 12  B-trim: 0 in 0/50
 Lambda= 0.123840
 statistics sampled from 13499 (13506) to 13499 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.415), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS72871.1 PEX11B gene_id:8799|Hs108|chr1         ( 259) 1741 320.9 5.5e-88
CCDS72870.1 PEX11B gene_id:8799|Hs108|chr1         ( 245) 1614 298.2 3.6e-81
CCDS10354.1 PEX11A gene_id:8800|Hs108|chr15        ( 247)  466 93.1   2e-19


>>CCDS72871.1 PEX11B gene_id:8799|Hs108|chr1              (259 aa)
 initn: 1741 init1: 1741 opt: 1741  Z-score: 1693.0  bits: 320.9 E(32554): 5.5e-88
Smith-Waterman score: 1741; 99.6% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS72 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
              190       200       210       220       230       240

              250         
pF1KE6 VSSILSILTLIYPWLRLKP
       :::::::::::::::::::
CCDS72 VSSILSILTLIYPWLRLKP
              250         

>>CCDS72870.1 PEX11B gene_id:8799|Hs108|chr1              (245 aa)
 initn: 1614 init1: 1614 opt: 1614  Z-score: 1570.7  bits: 298.2 E(32554): 3.6e-81
Smith-Waterman score: 1614; 99.6% identity (100.0% similar) in 241 aa overlap (19-259:5-245)

               10        20        30        40        50        60
pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR
                         ::::::::::::::::::::::::::::::::::::::::::
CCDS72               MGKLRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR
                             10        20        30        40      

               70        80        90       100       110       120
pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS72 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA
         50        60        70        80        90       100      

              130       140       150       160       170       180
pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG
        110       120       130       140       150       160      

              190       200       210       220       230       240
pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
        170       180       190       200       210       220      

              250         
pF1KE6 VSSILSILTLIYPWLRLKP
       :::::::::::::::::::
CCDS72 VSSILSILTLIYPWLRLKP
        230       240     

>>CCDS10354.1 PEX11A gene_id:8800|Hs108|chr15             (247 aa)
 initn: 715 init1: 463 opt: 466  Z-score: 462.2  bits: 93.1 E(32554): 2e-19
Smith-Waterman score: 677; 40.7% identity (73.3% similar) in 258 aa overlap (1-258:1-245)

               10        20        30        40        50        60
pF1KE6 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR
       :::..::. :.:.:.:: ::.::.: :: . :. .... ..  ....::: .: ::: .:
CCDS10 MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFVCDNVLWAGKSGLAPRVDQEKWA
       ::: . :........: .:.: :.:.:...:::..::.::..::. . ::.  ...::: 
CCDS10 LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG
        :. ..: .::...: :: ::: : :.. .  :.:  :          : ..   :   .
CCDS10 TRAAHHYYYSLLLSLVRDLYEISLQMKRVT--CDRAKK----------EKSASQDPLWFS
              130       140       150                   160        

              190       200       210       220       230       240
pF1KE6 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
        .  .    :.  .::: : :. :::::::.:.: ::.. :::.::... .:::.:: ::
CCDS10 VAEEETEW-LQSFLLLLFRSLKQHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGL
      170        180       190       200       210       220       

              250          
pF1KE6 VSSILSILTLIYPWLRLKP 
       :::: ...:. :: ..::  
CCDS10 VSSIAGMITVAYPQMKLKTR
       230       240       




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:10:38 2016 done: Tue Nov  8 15:10:38 2016
 Total Scan time:  2.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]