Result of FASTA (omim) for
pFN21AE6640
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6640, 226 aa
1>>>pF1KE6640 226 - 226 aa - 226 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1592+/-0.000279; mu= 14.9246+/- 0.017
mean_var=79.4808+/-16.077, 0's: 0 Z-trim(119.8): 116 B-trim: 19 in 2/60
Lambda= 0.143861
statistics sampled from 34130 (34264) to 34130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.402), width: 16
Scan time: 6.220
The best scores are: opt bits E(85289)
NP_001774 (OMIM: 112205,613501) B-cell antigen rec ( 226) 1589 338.7 4.9e-93
NP_067612 (OMIM: 112205,613501) B-cell antigen rec ( 188) 685 151.0 1.3e-36
NP_000617 (OMIM: 147245,612692) B-cell antigen rec ( 229) 171 44.4 0.00019
NP_001035022 (OMIM: 147245,612692) B-cell antigen ( 230) 171 44.4 0.00019
>>NP_001774 (OMIM: 112205,613501) B-cell antigen recepto (226 aa)
initn: 1589 init1: 1589 opt: 1589 Z-score: 1791.4 bits: 338.7 E(85289): 4.9e-93
Smith-Waterman score: 1589; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD
130 140 150 160 170 180
190 200 210 220
pF1KE6 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
190 200 210 220
>>NP_067612 (OMIM: 112205,613501) B-cell antigen recepto (188 aa)
initn: 1312 init1: 679 opt: 685 Z-score: 778.4 bits: 151.0 E(85289): 1.3e-36
Smith-Waterman score: 1240; 82.7% identity (83.2% similar) in 226 aa overlap (1-226:1-188)
10 20 30 40 50 60
pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPHNSSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYVCRVQEGNESYQQSCG
::::::::::::::::::::::::::::
NP_067 NANVTWWRVLHGNYTWPPEFLGPGEDPN--------------------------------
70 80
130 140 150 160 170 180
pF1KE6 TYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD
.:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 ------EPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGD
90 100 110 120 130 140
190 200 210 220
pF1KE6 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
::::::::::::::::::::::::::::::::::::::::::::::
NP_067 EYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
150 160 170 180
>>NP_000617 (OMIM: 147245,612692) B-cell antigen recepto (229 aa)
initn: 237 init1: 75 opt: 171 Z-score: 200.7 bits: 44.4 E(85289): 0.00019
Smith-Waterman score: 208; 29.7% identity (55.7% similar) in 185 aa overlap (27-202:40-210)
10 20 30 40 50
pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPH
: .:. .: . : . . : ....:
NP_000 PSHWMVALLLLLSAEPVPAARSEDRYRNPKGSACSRIW--QSPRFIARKRGFTVKMHCYM
10 20 30 40 50 60
60 70 80 90 100
pF1KE6 NSSNNANVTW-WRVLHGNYTWPPEF-LGPG---EDPN---GTLIIQNVNKSHGGIYVCRV
::... ::.: :. . : .. : : :. : .:: ::.. .::: :.
NP_000 NSASG-NVSWLWKQEMDEN--PQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 QEGNES-YQQSCGTYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRK
. .: : :.::: ::: : . . :. :: . ..... .:: ::: .
NP_000 KCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDK-
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 RWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
.. : :. :... ::::..:. . ::::
NP_000 --DDSKAGM------EEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
190 200 210 220
>>NP_001035022 (OMIM: 147245,612692) B-cell antigen rece (230 aa)
initn: 237 init1: 75 opt: 171 Z-score: 200.7 bits: 44.4 E(85289): 0.00019
Smith-Waterman score: 208; 29.7% identity (55.7% similar) in 185 aa overlap (27-202:41-211)
10 20 30 40 50
pF1KE6 MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAHFQCPH
: .:. .: . : . . : ....:
NP_001 SHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIW--QSPRFIARKRGFTVKMHCYM
20 30 40 50 60
60 70 80 90 100
pF1KE6 NSSNNANVTW-WRVLHGNYTWPPEF-LGPG---EDPN---GTLIIQNVNKSHGGIYVCRV
::... ::.: :. . : .. : : :. : .:: ::.. .::: :.
NP_001 NSASG-NVSWLWKQEMDEN--PQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 QEGNES-YQQSCGTYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLLLFRK
. .: : :.::: ::: : . . :. :: . ..... .:: ::: .
NP_001 KCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDK-
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 RWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYEDISRGLQGTYQDVGSLNIGDVQLEKP
.. : :. :... ::::..:. . ::::
NP_001 --DDSKAGM------EEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
190 200 210 220 230
226 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:01:25 2016 done: Tue Nov 8 15:01:26 2016
Total Scan time: 6.220 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]