FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6635, 247 aa
  1>>>pF1KE6635 247 - 247 aa - 247 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2826+/-0.000828; mu= 14.0928+/- 0.050
 mean_var=57.1942+/-11.387, 0's: 0 Z-trim(105.9): 15  B-trim: 0 in 0/50
 Lambda= 0.169589
 statistics sampled from 8666 (8673) to 8666 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.266), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS6760.1 NIPSNAP3A gene_id:25934|Hs108|chr9      ( 247) 1677 418.4 2.3e-117
CCDS6761.1 NIPSNAP3B gene_id:55335|Hs108|chr9      ( 247) 1492 373.1 9.6e-104
CCDS5521.1 GBAS gene_id:2631|Hs108|chr7            ( 286)  244 67.8   9e-12
CCDS13860.1 NIPSNAP1 gene_id:8508|Hs108|chr22      ( 284)  233 65.1 5.8e-11


>>CCDS6760.1 NIPSNAP3A gene_id:25934|Hs108|chr9           (247 aa)
 initn: 1677 init1: 1677 opt: 1677  Z-score: 2220.7  bits: 418.4 E(32554): 2.3e-117
Smith-Waterman score: 1677; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE6 MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP
              190       200       210       220       230       240

              
pF1KE6 TSFSPLK
       :::::::
CCDS67 TSFSPLK
              

>>CCDS6761.1 NIPSNAP3B gene_id:55335|Hs108|chr9           (247 aa)
 initn: 1492 init1: 1492 opt: 1492  Z-score: 1976.0  bits: 373.1 E(32554): 9.6e-104
Smith-Waterman score: 1492; 87.0% identity (96.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE6 MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNA
       ::::::.::.::::::::::.::::::::::::: :::::.::::::.:: :.::..:: 
CCDS67 MLVLRSGLTKALASRTLAPQVCSSFATGPRQYDGTFYEFRTYYLKPSNMNAFMENLKKNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 HLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLAL
       ::::..:::::.:::::::: : :::::::::::::.:::::::. :::::: .::::: 
CCDS67 HLRTSYSELVGFWSVEFGGRTNKVFHIWKYDNFAHRAEVRKALANCKEWQEQSIIPNLAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKL
       :::::.:::::.:: ::::::::::::::.:::::::::::::::.::..:::::::::.
CCDS67 IDKQETEITYLIPWSKLEKPPKEGVYELAVFQMKPGGPALWGDAFERAINAHVNLGYTKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 VGVFHTEYGELNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIP
              190       200       210       220       230       240

              
pF1KE6 TSFSPLK
       .::::::
CCDS67 ASFSPLK
              

>>CCDS5521.1 GBAS gene_id:2631|Hs108|chr7                 (286 aa)
 initn: 204 init1: 131 opt: 244  Z-score: 324.8  bits: 67.8 E(32554): 9e-12
Smith-Waterman score: 244; 24.5% identity (54.6% similar) in 249 aa overlap (10-247:47-286)

                                    10        20        30         
pF1KE6                      MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEF
                                     ..:  : . :.  .      ..  . .:..
CCDS55 LLQRAAPCSLLPRLRTWTSSSNRSREDSWLKSLFVRKVDPRKDAHSNLLAKKETSNLYKL
         20        30        40        50        60        70      

      40        50        60                70        80        90 
pF1KE6 RSYYLKPSKMNEFLENFEKNAH--LRTAHSE------LVGYWSVEFGGRMNTVFHIWKYD
       . . .::    : :: ..:  .  :   : .      ::: :.. .: ... . :.:.:.
CCDS55 QFHNVKP----ECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYG-EQDQAVHLWRYE
         80            90       100       110        120       130 

              100       110       120       130       140          
pF1KE6 N-FAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEG--VYEL
       . .   ::: . : ..::. :     .  :...... .  .  :   :  :. :  .:::
CCDS55 GGYPALTEVMNKLRENKEFLEFRKARSDMLLSRKNQLLLEFSFWN--EPVPRSGPNIYEL
             140       150       160       170         180         

      150       160       170       180       190       200        
pF1KE6 ATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNESADSRAA
        ..:..::    ::. . ::.. . . : .. :: : .. : :  :: ::  .. ..:  
CCDS55 RSYQLRPGTMIEWGNYWARAIRFRQD-G-NEAVGGFFSQIGQLYMVHHLWAYRDLQTRED
     190       200       210         220       230       240       

      210       220       230       240       
pF1KE6 GRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSPLK
        :. . .       :  .:  .  ... ..:: . :::.
CCDS55 IRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ
       250       260       270       280      

>>CCDS13860.1 NIPSNAP1 gene_id:8508|Hs108|chr22           (284 aa)
 initn: 192 init1:  93 opt: 233  Z-score: 310.3  bits: 65.1 E(32554): 5.8e-11
Smith-Waterman score: 233; 22.9% identity (53.9% similar) in 245 aa overlap (10-247:45-284)

                                    10        20        30         
pF1KE6                      MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEF
                                     :.:  . . :.  .  .   ..  . .:..
CCDS13 LLGGPGPRAGDVASAAAARFYSKDNEGSWFRSLFVHKVDPRKDAHSTLLSKKETSNLYKI
           20        30        40        50        60        70    

      40           50        60         70        80        90     
pF1KE6 RSYYLKPSKM---NEFLENFEKNAHLRTAHS-ELVGYWSVEFGGRMNTVFHIWKYDN-FA
       . . .::  .   : . :    . ::   .   ::: :.. .: ... . :.:.... . 
CCDS13 QFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYG-EQDQAVHLWRFSGGYP
           80        90       100       110        120       130   

          100       110       120       130       140         150  
pF1KE6 HRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEG--VYELATFQ
          .  . : ..::. :     .  :...... .  .  :   :  :. :  .::: :..
CCDS13 ALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWN--EPQPRMGPNIYELRTYK
           140       150       160       170         180       190 

            160       170       180       190       200       210  
pF1KE6 MKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNESADSRAAGRHK
       .:::    ::. . ::.. . .    . :: : .. : :  :: ::  .. .::   :. 
CCDS13 LKPGTMIEWGNNWARAIKYRQE--NQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNA
             200       210         220       230       240         

            220       230       240       
pF1KE6 SHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSPLK
       . .       :  .:  .  ... ..:: ..:::.
CCDS13 AWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ
     250       260       270       280    




247 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:58:41 2016 done: Tue Nov  8 14:58:41 2016
 Total Scan time:  1.670 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]