Result of FASTA (omim) for
pFN21AE6630
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6630, 257 aa
1>>>pF1KE6630 257 - 257 aa - 257 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6775+/-0.000364; mu= 12.6046+/- 0.023
mean_var=68.2605+/-13.125, 0's: 0 Z-trim(113.8): 27 B-trim: 0 in 0/50
Lambda= 0.155235
statistics sampled from 23283 (23305) to 23283 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.273), width: 16
Scan time: 6.430
The best scores are: opt bits E(85289)
NP_001073847 (OMIM: 608427) parkin coregulated gen ( 257) 1727 395.6 4.6e-110
NP_001073848 (OMIM: 608427) parkin coregulated gen ( 257) 1727 395.6 4.6e-110
XP_011533764 (OMIM: 608427) PREDICTED: parkin core ( 268) 1384 318.8 6.3e-87
XP_011533763 (OMIM: 608427) PREDICTED: parkin core ( 269) 1384 318.8 6.3e-87
XP_005266883 (OMIM: 608427) PREDICTED: parkin core ( 211) 1381 318.1 8.2e-87
XP_011533771 (OMIM: 608427) PREDICTED: parkin core ( 206) 1379 317.6 1.1e-86
XP_011533770 (OMIM: 608427) PREDICTED: parkin core ( 209) 1379 317.6 1.1e-86
XP_006715408 (OMIM: 608427) PREDICTED: parkin core ( 212) 1379 317.6 1.1e-86
XP_005266882 (OMIM: 608427) PREDICTED: parkin core ( 214) 1379 317.6 1.1e-86
XP_011533768 (OMIM: 608427) PREDICTED: parkin core ( 214) 1379 317.6 1.1e-86
XP_006715407 (OMIM: 608427) PREDICTED: parkin core ( 221) 1379 317.6 1.2e-86
XP_016865769 (OMIM: 608427) PREDICTED: parkin core ( 259) 1379 317.7 1.3e-86
NP_689623 (OMIM: 608427) parkin coregulated gene p ( 296) 1379 317.7 1.5e-86
XP_016865767 (OMIM: 608427) PREDICTED: parkin core ( 338) 1379 317.7 1.7e-86
XP_016865768 (OMIM: 608427) PREDICTED: parkin core ( 338) 1379 317.7 1.7e-86
XP_016865766 (OMIM: 608427) PREDICTED: parkin core ( 338) 1379 317.7 1.7e-86
XP_016865765 (OMIM: 608427) PREDICTED: parkin core ( 338) 1379 317.7 1.7e-86
XP_016865764 (OMIM: 608427) PREDICTED: parkin core ( 338) 1379 317.7 1.7e-86
XP_011533773 (OMIM: 608427) PREDICTED: parkin core ( 172) 659 156.4 3.2e-38
XP_016865770 (OMIM: 608427) PREDICTED: parkin core ( 220) 567 135.8 6.4e-32
XP_016865771 (OMIM: 608427) PREDICTED: parkin core ( 220) 567 135.8 6.4e-32
>>NP_001073847 (OMIM: 608427) parkin coregulated gene pr (257 aa)
initn: 1727 init1: 1727 opt: 1727 Z-score: 2097.0 bits: 395.6 E(85289): 4.6e-110
Smith-Waterman score: 1727; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
190 200 210 220 230 240
250
pF1KE6 FINIKYVVPTYESCLLN
:::::::::::::::::
NP_001 FINIKYVVPTYESCLLN
250
>>NP_001073848 (OMIM: 608427) parkin coregulated gene pr (257 aa)
initn: 1727 init1: 1727 opt: 1727 Z-score: 2097.0 bits: 395.6 E(85289): 4.6e-110
Smith-Waterman score: 1727; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
190 200 210 220 230 240
250
pF1KE6 FINIKYVVPTYESCLLN
:::::::::::::::::
NP_001 FINIKYVVPTYESCLLN
250
>>XP_011533764 (OMIM: 608427) PREDICTED: parkin coregula (268 aa)
initn: 1384 init1: 1384 opt: 1384 Z-score: 1681.6 bits: 318.8 E(85289): 6.3e-87
Smith-Waterman score: 1384; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
:::::::::::::::::::::::::
XP_011 MVGKALVPYYRQILPVLNIFKNMNVLKLLHPKRVLPKRSLTTGAALTTLPRLSPHVGSPY
190 200 210 220 230 240
>>XP_011533763 (OMIM: 608427) PREDICTED: parkin coregula (269 aa)
initn: 1384 init1: 1384 opt: 1384 Z-score: 1681.6 bits: 318.8 E(85289): 6.3e-87
Smith-Waterman score: 1384; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
:::::::::::::::::::::::::
XP_011 MVGKALVPYYRQILPVLNIFKNMNVTHRQRSELSSMLAKWGGPDLLLVFLPFSTIIVCKS
190 200 210 220 230 240
>>XP_005266883 (OMIM: 608427) PREDICTED: parkin coregula (211 aa)
initn: 1379 init1: 1379 opt: 1381 Z-score: 1679.6 bits: 318.1 E(85289): 8.2e-87
Smith-Waterman score: 1381; 97.6% identity (98.1% similar) in 211 aa overlap (1-211:1-208)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
:::::::::::::::::::::::: :: .
XP_005 MVGKALVPYYRQILPVLNIFKNMN---GDTVPNY
190 200 210
250
pF1KE6 FINIKYVVPTYESCLLN
>>XP_011533771 (OMIM: 608427) PREDICTED: parkin coregula (206 aa)
initn: 1379 init1: 1379 opt: 1379 Z-score: 1677.3 bits: 317.6 E(85289): 1.1e-86
Smith-Waterman score: 1379; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
::::::::::::::::::::::::
XP_011 MVGKALVPYYRQILPVLNIFKNMNGI
190 200
>>XP_011533770 (OMIM: 608427) PREDICTED: parkin coregula (209 aa)
initn: 1379 init1: 1379 opt: 1379 Z-score: 1677.2 bits: 317.6 E(85289): 1.1e-86
Smith-Waterman score: 1379; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
::::::::::::::::::::::::
XP_011 MVGKALVPYYRQILPVLNIFKNMNGWAPP
190 200
>>XP_006715408 (OMIM: 608427) PREDICTED: parkin coregula (212 aa)
initn: 1379 init1: 1379 opt: 1379 Z-score: 1677.1 bits: 317.6 E(85289): 1.1e-86
Smith-Waterman score: 1379; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
::::::::::::::::::::::::
XP_006 MVGKALVPYYRQILPVLNIFKNMNDMWEVTLA
190 200 210
>>XP_005266882 (OMIM: 608427) PREDICTED: parkin coregula (214 aa)
initn: 1379 init1: 1379 opt: 1379 Z-score: 1677.1 bits: 317.6 E(85289): 1.1e-86
Smith-Waterman score: 1379; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
::::::::::::::::::::::::
XP_005 MVGKALVPYYRQILPVLNIFKNMNEWNINGSEEA
190 200 210
>>XP_011533768 (OMIM: 608427) PREDICTED: parkin coregula (214 aa)
initn: 1379 init1: 1379 opt: 1379 Z-score: 1677.1 bits: 317.6 E(85289): 1.1e-86
Smith-Waterman score: 1379; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
::::::::::::::::::::::::
XP_011 MVGKALVPYYRQILPVLNIFKNMNEVASCSFPPM
190 200 210
257 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:55:59 2016 done: Tue Nov 8 14:56:00 2016
Total Scan time: 6.430 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]