FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6625, 334 aa
  1>>>pF1KE6625 334 - 334 aa - 334 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8316+/-0.00102; mu= 2.9424+/- 0.061
 mean_var=291.8560+/-58.944, 0's: 0 Z-trim(113.3): 133  B-trim: 0 in 0/52
 Lambda= 0.075074
 statistics sampled from 13827 (13960) to 13827 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.429), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS3181.1 RSRC1 gene_id:51319|Hs108|chr3          ( 334) 2127 243.3 2.1e-64
CCDS63822.1 RSRC1 gene_id:51319|Hs108|chr3         ( 276) 1179 140.5 1.5e-33


>>CCDS3181.1 RSRC1 gene_id:51319|Hs108|chr3               (334 aa)
 initn: 2127 init1: 2127 opt: 2127  Z-score: 1269.9  bits: 243.3 E(32554): 2.1e-64
Smith-Waterman score: 2127; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)

               10        20        30        40        50        60
pF1KE6 MGRRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRKSRSKSRSWSRDLQPRSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGRRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRKSRSKSRSWSRDLQPRSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SYDRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSRSRPRLRSHSRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SYDRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSRSRPRLRSHSRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SERSSHRRTRSRSRDRERRKGRDKEKREKEKDKGKDKELHNIKRGESGNIKAGLEHLPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SERSSHRRTRSRSRDRERRKGRDKEKREKEKDKGKDKELHNIKRGESGNIKAGLEHLPPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 EQAKARLQLVLEAAAKADEALKAKERNEEEAKRRKEEDQATLVEQVKRVKEIEAIESDSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EQAKARLQLVLEAAAKADEALKAKERNEEEAKRRKEEDQATLVEQVKRVKEIEAIESDSF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VQQTFRSSKEVKKSVEPSEVKQATSTSGPASAVADPPSTEKEIDPTSIPTAIKYQDDNSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VQQTFRSSKEVKKSVEPSEVKQATSTSGPASAVADPPSTEKEIDPTSIPTAIKYQDDNSL
              250       260       270       280       290       300

              310       320       330    
pF1KE6 AHPNLFIEKADAEEKWFKRLIALRQERLMGSPVA
       ::::::::::::::::::::::::::::::::::
CCDS31 AHPNLFIEKADAEEKWFKRLIALRQERLMGSPVA
              310       320       330    

>>CCDS63822.1 RSRC1 gene_id:51319|Hs108|chr3              (276 aa)
 initn: 1126 init1: 1126 opt: 1179  Z-score: 716.0  bits: 140.5 E(32554): 1.5e-33
Smith-Waterman score: 1619; 82.6% identity (82.6% similar) in 334 aa overlap (1-334:1-276)

               10        20        30        40        50        60
pF1KE6 MGRRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRKSRSKSRSWSRDLQPRSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MGRRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRKSRSKSRSWSRDLQPRSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SYDRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSRSRPRLRSHSRS
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS63 SYDRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRR-------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE6 SERSSHRRTRSRSRDRERRKGRDKEKREKEKDKGKDKELHNIKRGESGNIKAGLEHLPPA
                                                    :::::::::::::::
CCDS63 ---------------------------------------------ESGNIKAGLEHLPPA
                                                    110       120  

              190       200       210       220       230       240
pF1KE6 EQAKARLQLVLEAAAKADEALKAKERNEEEAKRRKEEDQATLVEQVKRVKEIEAIESDSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EQAKARLQLVLEAAAKADEALKAKERNEEEAKRRKEEDQATLVEQVKRVKEIEAIESDSF
            130       140       150       160       170       180  

              250       260       270       280       290       300
pF1KE6 VQQTFRSSKEVKKSVEPSEVKQATSTSGPASAVADPPSTEKEIDPTSIPTAIKYQDDNSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VQQTFRSSKEVKKSVEPSEVKQATSTSGPASAVADPPSTEKEIDPTSIPTAIKYQDDNSL
            190       200       210       220       230       240  

              310       320       330    
pF1KE6 AHPNLFIEKADAEEKWFKRLIALRQERLMGSPVA
       ::::::::::::::::::::::::::::::::::
CCDS63 AHPNLFIEKADAEEKWFKRLIALRQERLMGSPVA
            250       260       270      




334 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:53:58 2016 done: Tue Nov  8 14:53:58 2016
 Total Scan time:  1.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]