FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6617, 336 aa
  1>>>pF1KE6617 336 - 336 aa - 336 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8602+/-0.000333; mu= 13.2660+/- 0.021
 mean_var=75.9178+/-14.640, 0's: 0 Z-trim(116.6): 39  B-trim: 66 in 1/54
 Lambda= 0.147198
 statistics sampled from 27953 (27983) to 27953 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.328), width:  16
 Scan time:  5.950

The best scores are:                                      opt bits E(85289)
NP_004804 (OMIM: 603360,614876,614877) peroxisomal ( 336) 2234 483.6 2.6e-136
NP_476515 (OMIM: 603360,614876,614877) peroxisomal ( 346) 2084 451.7  1e-126
XP_011518776 (OMIM: 603360,614876,614877) PREDICTE ( 295) 1925 417.9 1.3e-116


>>NP_004804 (OMIM: 603360,614876,614877) peroxisomal bio  (336 aa)
 initn: 2234 init1: 2234 opt: 2234  Z-score: 2568.3  bits: 483.6 E(85289): 2.6e-136
Smith-Waterman score: 2234; 100.0% identity (100.0% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KE6 MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 TPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 RSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARIL
              250       260       270       280       290       300

              310       320       330      
pF1KE6 FLLQLLADHVPGVGLVTRPLMDYLPTWQKIYFYSWG
       ::::::::::::::::::::::::::::::::::::
NP_004 FLLQLLADHVPGVGLVTRPLMDYLPTWQKIYFYSWG
              310       320       330      

>>NP_476515 (OMIM: 603360,614876,614877) peroxisomal bio  (346 aa)
 initn: 2084 init1: 2084 opt: 2084  Z-score: 2395.9  bits: 451.7 E(85289): 1e-126
Smith-Waterman score: 2084; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KE6 MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 NDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 AVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 TPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 TPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 RSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 RSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARIL
              250       260       270       280       290       300

              310       320       330                
pF1KE6 FLLQLLADHVPGVGLVTRPLMDYLPTWQKIYFYSWG          
       :::::::::::::::::                             
NP_476 FLLQLLADHVPGVGLVTTSQRAASPCLPARPHTQPWSPPAFLPGHP
              310       320       330       340      

>>XP_011518776 (OMIM: 603360,614876,614877) PREDICTED: p  (295 aa)
 initn: 1925 init1: 1925 opt: 1925  Z-score: 2214.5  bits: 417.9 E(85289): 1.3e-116
Smith-Waterman score: 1925; 98.6% identity (99.3% similar) in 291 aa overlap (46-336:5-295)

          20        30        40        50        60        70     
pF1KE6 TRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLLNDGILRKELRKKLPV
                                     :.  ::::::::::::::::::::::::::
XP_011                           MHWVLKSRVYSASNLLVLLNDGILRKELRKKLPV
                                         10        20        30    

          80        90       100       110       120       130     
pF1KE6 SLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAKAVLRMLLLLWFKAGL
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
XP_011 SLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALVQLAKAVLRMLLLLWFKAGL
           40        50        60        70        80        90    

         140       150       160       170       180       190     
pF1KE6 QTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQR
          100       110       120       130       140       150    

         200       210       220       230       240       250     
pF1KE6 EGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQRSWKPWLLAGVVDVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQRSWKPWLLAGVVDVT
          160       170       180       190       200       210    

         260       270       280       290       300       310     
pF1KE6 SLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARILFLLQLLADHVPGVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARILFLLQLLADHVPGVGL
          220       230       240       250       260       270    

         320       330      
pF1KE6 VTRPLMDYLPTWQKIYFYSWG
       :::::::::::::::::::::
XP_011 VTRPLMDYLPTWQKIYFYSWG
          280       290     




336 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:49:09 2016 done: Tue Nov  8 14:49:10 2016
 Total Scan time:  5.950 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]