FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6617, 336 aa
  1>>>pF1KE6617 336 - 336 aa - 336 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6366+/-0.000729; mu= 14.7493+/- 0.044
 mean_var=73.4039+/-14.392, 0's: 0 Z-trim(109.7): 12  B-trim: 2 in 1/48
 Lambda= 0.149697
 statistics sampled from 11092 (11099) to 11092 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.341), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS31472.1 PEX16 gene_id:9409|Hs108|chr11         ( 336) 2233 491.2 5.1e-139
CCDS7917.1 PEX16 gene_id:9409|Hs108|chr11          ( 346) 2083 458.8  3e-129


>>CCDS31472.1 PEX16 gene_id:9409|Hs108|chr11              (336 aa)
 initn: 2233 init1: 2233 opt: 2233  Z-score: 2609.2  bits: 491.2 E(32554): 5.1e-139
Smith-Waterman score: 2233; 99.7% identity (100.0% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KE6 MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS31 NDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALVQLAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 TPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 RSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARIL
              250       260       270       280       290       300

              310       320       330      
pF1KE6 FLLQLLADHVPGVGLVTRPLMDYLPTWQKIYFYSWG
       ::::::::::::::::::::::::::::::::::::
CCDS31 FLLQLLADHVPGVGLVTRPLMDYLPTWQKIYFYSWG
              310       320       330      

>>CCDS7917.1 PEX16 gene_id:9409|Hs108|chr11               (346 aa)
 initn: 2083 init1: 2083 opt: 2083  Z-score: 2434.0  bits: 458.8 E(32554): 3e-129
Smith-Waterman score: 2083; 99.7% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KE6 MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS79 NDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALVQLAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 AVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 TPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 TPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQETIAEFLYIARPLLHLLSLGLWGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 RSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRRRTILLLYYLLRSPFYDRFSEARIL
              250       260       270       280       290       300

              310       320       330                
pF1KE6 FLLQLLADHVPGVGLVTRPLMDYLPTWQKIYFYSWG          
       :::::::::::::::::                             
CCDS79 FLLQLLADHVPGVGLVTTSQRAASPCLPARPHTQPWSPPAFLPGHP
              310       320       330       340      




336 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:49:08 2016 done: Tue Nov  8 14:49:09 2016
 Total Scan time:  2.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]