Result of FASTA (omim) for
pFN21AE6616
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6616, 335 aa
1>>>pF1KE6616 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2793+/-0.000258; mu= 7.9206+/- 0.016
mean_var=117.9381+/-24.096, 0's: 0 Z-trim(123.0): 13 B-trim: 2321 in 1/58
Lambda= 0.118099
statistics sampled from 41914 (41929) to 41914 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.492), width: 16
Scan time: 7.650
The best scores are: opt bits E(85289)
NP_036332 (OMIM: 245600,606374) galactosylgalactos ( 335) 2288 399.9 4e-111
NP_001275650 (OMIM: 245600,606374) galactosylgalac ( 328) 2129 372.8 5.6e-103
NP_001275651 (OMIM: 245600,606374) galactosylgalac ( 319) 2081 364.6 1.6e-100
NP_001275652 (OMIM: 245600,606374) galactosylgalac ( 315) 2071 362.9 5.1e-100
XP_016873039 (OMIM: 151290) PREDICTED: galactosylg ( 334) 870 158.3 2.1e-38
NP_473366 (OMIM: 151290) galactosylgalactosylxylos ( 334) 870 158.3 2.1e-38
NP_061114 (OMIM: 151290) galactosylgalactosylxylos ( 334) 870 158.3 2.1e-38
XP_016873040 (OMIM: 151290) PREDICTED: galactosylg ( 347) 870 158.3 2.2e-38
XP_005271563 (OMIM: 151290) PREDICTED: galactosylg ( 347) 870 158.3 2.2e-38
XP_011541053 (OMIM: 151290) PREDICTED: galactosylg ( 347) 870 158.3 2.2e-38
XP_011541055 (OMIM: 151290) PREDICTED: galactosylg ( 347) 870 158.3 2.2e-38
XP_016873041 (OMIM: 151290) PREDICTED: galactosylg ( 230) 757 139.0 9.6e-33
NP_542780 (OMIM: 607497) galactosylgalactosylxylos ( 323) 578 108.5 1.9e-23
>>NP_036332 (OMIM: 245600,606374) galactosylgalactosylxy (335 aa)
initn: 2288 init1: 2288 opt: 2288 Z-score: 2116.1 bits: 399.9 E(85289): 4e-111
Smith-Waterman score: 2288; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KE6 MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN
250 260 270 280 290 300
310 320 330
pF1KE6 CTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
:::::::::::::::::::::::::::::::::::
NP_036 CTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
310 320 330
>>NP_001275650 (OMIM: 245600,606374) galactosylgalactosy (328 aa)
initn: 2129 init1: 2129 opt: 2129 Z-score: 1969.8 bits: 372.8 E(85289): 5.6e-103
Smith-Waterman score: 2129; 100.0% identity (100.0% similar) in 308 aa overlap (28-335:21-328)
10 20 30 40 50 60
pF1KE6 MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR
:::::::::::::::::::::::::::::::::
NP_001 MDRTLPLMQRFRDSATALSSGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE6 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE6 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN
240 250 260 270 280 290
310 320 330
pF1KE6 CTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
:::::::::::::::::::::::::::::::::::
NP_001 CTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
300 310 320
>>NP_001275651 (OMIM: 245600,606374) galactosylgalactosy (319 aa)
initn: 2120 init1: 2074 opt: 2081 Z-score: 1925.8 bits: 364.6 E(85289): 1.6e-100
Smith-Waterman score: 2081; 98.1% identity (98.4% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KE6 MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN
250 260 270 280 290 300
310 320 330
pF1KE6 CTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
::: :. : :
NP_001 CTRSLAVSPRLECSSAILA
310
>>NP_001275652 (OMIM: 245600,606374) galactosylgalactosy (315 aa)
initn: 2071 init1: 2071 opt: 2071 Z-score: 1916.7 bits: 362.9 E(85289): 5.1e-100
Smith-Waterman score: 2071; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)
10 20 30 40 50 60
pF1KE6 MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN
250 260 270 280 290 300
310 320 330
pF1KE6 CTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
:::
NP_001 CTRTESRCVTQAGVQ
310
>>XP_016873039 (OMIM: 151290) PREDICTED: galactosylgalac (334 aa)
initn: 863 init1: 347 opt: 870 Z-score: 810.4 bits: 158.3 E(85289): 2.1e-38
Smith-Waterman score: 885; 55.2% identity (73.7% similar) in 270 aa overlap (68-335:77-334)
40 50 60 70 80 90
pF1KE6 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
:: ..::::.::::::.: ::::::.:..
XP_016 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
50 60 70 80 90 100
100 110 120 130 140 150
pF1KE6 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
XP_016 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
110 120 130 140 150 160
160 170 180 190 200 210
pF1KE6 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
XP_016 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
170 180 190 200 210
220 230 240 250 260 270
pF1KE6 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
XP_016 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
220 230 240 250 260 270
280 290 300 310 320 330
pF1KE6 RG-HLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
.: . ::::: .:: .::::.:::::..:::::::::: . .: ..: .::..:.
XP_016 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNE---GKKGF-TDPSVEI
280 290 300 310 320 330
>>NP_473366 (OMIM: 151290) galactosylgalactosylxylosylpr (334 aa)
initn: 863 init1: 347 opt: 870 Z-score: 810.4 bits: 158.3 E(85289): 2.1e-38
Smith-Waterman score: 885; 55.2% identity (73.7% similar) in 270 aa overlap (68-335:77-334)
40 50 60 70 80 90
pF1KE6 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
:: ..::::.::::::.: ::::::.:..
NP_473 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
50 60 70 80 90 100
100 110 120 130 140 150
pF1KE6 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
NP_473 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
110 120 130 140 150 160
160 170 180 190 200 210
pF1KE6 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
NP_473 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
170 180 190 200 210
220 230 240 250 260 270
pF1KE6 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
NP_473 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
220 230 240 250 260 270
280 290 300 310 320 330
pF1KE6 RG-HLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
.: . ::::: .:: .::::.:::::..:::::::::: . .: ..: .::..:.
NP_473 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNE---GKKGF-TDPSVEI
280 290 300 310 320 330
>>NP_061114 (OMIM: 151290) galactosylgalactosylxylosylpr (334 aa)
initn: 863 init1: 347 opt: 870 Z-score: 810.4 bits: 158.3 E(85289): 2.1e-38
Smith-Waterman score: 885; 55.2% identity (73.7% similar) in 270 aa overlap (68-335:77-334)
40 50 60 70 80 90
pF1KE6 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
:: ..::::.::::::.: ::::::.:..
NP_061 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
50 60 70 80 90 100
100 110 120 130 140 150
pF1KE6 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
NP_061 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
110 120 130 140 150 160
160 170 180 190 200 210
pF1KE6 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
NP_061 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
170 180 190 200 210
220 230 240 250 260 270
pF1KE6 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
NP_061 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
220 230 240 250 260 270
280 290 300 310 320 330
pF1KE6 RG-HLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
.: . ::::: .:: .::::.:::::..:::::::::: . .: ..: .::..:.
NP_061 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNE---GKKGF-TDPSVEI
280 290 300 310 320 330
>>XP_016873040 (OMIM: 151290) PREDICTED: galactosylgalac (347 aa)
initn: 863 init1: 347 opt: 870 Z-score: 810.1 bits: 158.3 E(85289): 2.2e-38
Smith-Waterman score: 885; 55.2% identity (73.7% similar) in 270 aa overlap (68-335:90-347)
40 50 60 70 80 90
pF1KE6 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
:: ..::::.::::::.: ::::::.:..
XP_016 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE6 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
XP_016 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE6 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
XP_016 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE6 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
XP_016 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE6 RG-HLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
.: . ::::: .:: .::::.:::::..:::::::::: . .: ..: .::..:.
XP_016 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNE---GKKGF-TDPSVEI
300 310 320 330 340
>>XP_005271563 (OMIM: 151290) PREDICTED: galactosylgalac (347 aa)
initn: 863 init1: 347 opt: 870 Z-score: 810.1 bits: 158.3 E(85289): 2.2e-38
Smith-Waterman score: 885; 55.2% identity (73.7% similar) in 270 aa overlap (68-335:90-347)
40 50 60 70 80 90
pF1KE6 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
:: ..::::.::::::.: ::::::.:..
XP_005 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE6 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
XP_005 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE6 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
XP_005 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE6 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
XP_005 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE6 RG-HLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
.: . ::::: .:: .::::.:::::..:::::::::: . .: ..: .::..:.
XP_005 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNE---GKKGF-TDPSVEI
300 310 320 330 340
>>XP_011541053 (OMIM: 151290) PREDICTED: galactosylgalac (347 aa)
initn: 863 init1: 347 opt: 870 Z-score: 810.1 bits: 158.3 E(85289): 2.2e-38
Smith-Waterman score: 885; 55.2% identity (73.7% similar) in 270 aa overlap (68-335:90-347)
40 50 60 70 80 90
pF1KE6 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLS
:: ..::::.::::::.: ::::::.:..
XP_011 TPPGADPREYCTSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE6 QTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRG
.:: :: ::::.:::: :::.. :: .:: .::: : ::. .:: :::
XP_011 NTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE6 VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP
. ::: :: ::: : : . ::::::::::::: ::::::: :: :::::
XP_011 TMQRNLALRWLR--------ETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWP
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE6 VGLVGGLRFEGPQVQD-GRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAP
:..:::::.:.:.:. :.:::..:...: ::: .::::::: : :.:.. .: : .
XP_011 VAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGV
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE6 RG-HLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
.: . ::::: .:: .::::.:::::..:::::::::: . .: ..: .::..:.
XP_011 KGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNE---GKKGF-TDPSVEI
300 310 320 330 340
335 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:48:20 2016 done: Tue Nov 8 14:48:21 2016
Total Scan time: 7.650 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]