FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6610, 260 aa
  1>>>pF1KE6610 260 - 260 aa - 260 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8041+/-0.000949; mu= 8.1495+/- 0.057
 mean_var=109.3160+/-21.482, 0's: 0 Z-trim(108.1): 19  B-trim: 0 in 0/50
 Lambda= 0.122668
 statistics sampled from 9968 (9977) to 9968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.306), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS4025.1 NSA2 gene_id:10412|Hs108|chr5           ( 260) 1725 315.7   2e-86
CCDS75260.1 NSA2 gene_id:10412|Hs108|chr5          ( 189) 1162 216.0 1.5e-56


>>CCDS4025.1 NSA2 gene_id:10412|Hs108|chr5                (260 aa)
 initn: 1725 init1: 1725 opt: 1725  Z-score: 1665.1  bits: 315.7 E(32554): 2e-86
Smith-Waterman score: 1725; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
              190       200       210       220       230       240

              250       260
pF1KE6 YAQVTNNPENDGCINAVLLV
       ::::::::::::::::::::
CCDS40 YAQVTNNPENDGCINAVLLV
              250       260

>>CCDS75260.1 NSA2 gene_id:10412|Hs108|chr5               (189 aa)
 initn: 1162 init1: 1162 opt: 1162  Z-score: 1128.7  bits: 216.0 E(32554): 1.5e-56
Smith-Waterman score: 1162; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)

               10        20        30        40        50        60
pF1KE6 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
CCDS75 LPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMENMPRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGK
                                                                   
CCDS75 PTILKMMDV                                                   
                                                                   




260 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:45:10 2016 done: Tue Nov  8 14:45:10 2016
 Total Scan time:  1.790 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]