Result of FASTA (omim) for
pFN21AE6605
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6605, 271 aa
1>>>pF1KE6605 271 - 271 aa - 271 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2487+/-0.000373; mu= 12.6555+/- 0.024
mean_var=148.7796+/-30.587, 0's: 0 Z-trim(119.1): 483 B-trim: 1272 in 1/53
Lambda= 0.105148
statistics sampled from 32240 (32792) to 32240 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.384), width: 16
Scan time: 4.810
The best scores are: opt bits E(85289)
NP_076932 (OMIM: 265050,612502) collectin-11 isofo ( 271) 1862 293.6 2.6e-79
NP_001242914 (OMIM: 265050,612502) collectin-11 is ( 285) 1862 293.6 2.7e-79
NP_001242915 (OMIM: 265050,612502) collectin-11 is ( 245) 1590 252.3 6.4e-67
NP_001242916 (OMIM: 265050,612502) collectin-11 is ( 221) 1416 225.8 5.3e-59
NP_001242911 (OMIM: 265050,612502) collectin-11 is ( 247) 1416 225.9 5.7e-59
XP_005263910 (OMIM: 265050,612502) PREDICTED: coll ( 261) 1416 225.9 5.9e-59
NP_954705 (OMIM: 265050,612502) collectin-11 isofo ( 268) 1414 225.6 7.4e-59
NP_001242917 (OMIM: 265050,612502) collectin-11 is ( 221) 1355 216.6 3.2e-56
NP_001242912 (OMIM: 265050,612502) collectin-11 is ( 247) 1355 216.6 3.5e-56
XP_006711960 (OMIM: 265050,612502) PREDICTED: coll ( 261) 1355 216.7 3.6e-56
NP_001242913 (OMIM: 265050,612502) collectin-11 is ( 223) 1249 200.5 2.2e-51
NP_001242918 (OMIM: 265050,612502) collectin-11 is ( 197) 1239 198.9 5.9e-51
NP_006429 (OMIM: 607620) collectin-10 isoform 1 pr ( 277) 938 153.4 4.1e-37
NP_001311024 (OMIM: 607620) collectin-10 isoform 2 ( 208) 827 136.5 4e-32
XP_005250813 (OMIM: 607620) PREDICTED: collectin-1 ( 208) 827 136.5 4e-32
XP_006717924 (OMIM: 154545,614372) PREDICTED: mann ( 248) 385 69.5 6.8e-12
NP_000233 (OMIM: 154545,614372) mannose-binding pr ( 248) 385 69.5 6.8e-12
XP_011538118 (OMIM: 154545,614372) PREDICTED: mann ( 248) 385 69.5 6.8e-12
NP_001158118 (OMIM: 178500,178630) pulmonary surfa ( 199) 308 57.7 1.9e-08
NP_001158117 (OMIM: 178500,178630) pulmonary surfa ( 214) 308 57.8 2e-08
XP_006714997 (OMIM: 610043) PREDICTED: collagen al ( 557) 298 56.7 1.1e-07
XP_011532992 (OMIM: 610043) PREDICTED: collagen al ( 548) 297 56.5 1.2e-07
XP_016855830 (OMIM: 120326) PREDICTED: collagen al (1028) 286 55.2 5.8e-07
XP_016855829 (OMIM: 120326) PREDICTED: collagen al (1077) 286 55.2 6e-07
XP_011539030 (OMIM: 120326) PREDICTED: collagen al (1089) 286 55.2 6e-07
XP_011539029 (OMIM: 120326) PREDICTED: collagen al (1302) 286 55.3 6.7e-07
XP_011524043 (OMIM: 607621) PREDICTED: collectin-1 ( 725) 282 54.4 7e-07
XP_011539028 (OMIM: 120326) PREDICTED: collagen al (1402) 286 55.3 7.1e-07
XP_011539026 (OMIM: 120326) PREDICTED: collagen al (1563) 286 55.4 7.6e-07
XP_011539025 (OMIM: 120326) PREDICTED: collagen al (1573) 286 55.4 7.6e-07
XP_005270538 (OMIM: 120326) PREDICTED: collagen al (1588) 286 55.4 7.7e-07
XP_011539024 (OMIM: 120326) PREDICTED: collagen al (1589) 286 55.4 7.7e-07
XP_016855828 (OMIM: 120326) PREDICTED: collagen al (1592) 286 55.4 7.7e-07
XP_016855827 (OMIM: 120326) PREDICTED: collagen al (1593) 286 55.4 7.7e-07
NP_001847 (OMIM: 120326) collagen alpha-1(XVI) cha (1604) 286 55.4 7.7e-07
NP_569057 (OMIM: 607621) collectin-12 [Homo sapien ( 742) 281 54.3 7.9e-07
XP_016865507 (OMIM: 610043) PREDICTED: collagen al ( 305) 275 52.9 8.3e-07
XP_011532994 (OMIM: 610043) PREDICTED: collagen al ( 472) 275 53.1 1.1e-06
XP_005257115 (OMIM: 114000,120150,130000,130060,16 (1374) 281 54.6 1.2e-06
NP_775736 (OMIM: 610043) collagen alpha-1(XXIII) c ( 540) 275 53.2 1.2e-06
XP_006714999 (OMIM: 610043) PREDICTED: collagen al ( 545) 275 53.2 1.2e-06
XP_011532991 (OMIM: 610043) PREDICTED: collagen al ( 548) 275 53.2 1.2e-06
XP_011532990 (OMIM: 610043) PREDICTED: collagen al ( 557) 275 53.2 1.2e-06
XP_006714996 (OMIM: 610043) PREDICTED: collagen al ( 566) 275 53.2 1.2e-06
NP_536800 (OMIM: 603033,603034) acetylcholinestera ( 421) 273 52.8 1.3e-06
NP_536799 (OMIM: 603033,603034) acetylcholinestera ( 445) 273 52.8 1.3e-06
NP_005668 (OMIM: 603033,603034) acetylcholinestera ( 455) 273 52.8 1.3e-06
NP_001243003 (OMIM: 610004,616219) collagen alpha- ( 645) 275 53.3 1.4e-06
XP_011532993 (OMIM: 610043) PREDICTED: collagen al ( 530) 273 52.9 1.5e-06
XP_011530660 (OMIM: 610004,616219) PREDICTED: coll ( 535) 273 52.9 1.5e-06
>>NP_076932 (OMIM: 265050,612502) collectin-11 isoform a (271 aa)
initn: 1862 init1: 1862 opt: 1862 Z-score: 1544.9 bits: 293.6 E(85289): 2.6e-79
Smith-Waterman score: 1862; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)
10 20 30 40 50 60
pF1KE6 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDAGEKGDKGAPGRPGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDAGEKGDKGAPGRPGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 VGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
190 200 210 220 230 240
250 260 270
pF1KE6 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
:::::::::::::::::::::::::::::::
NP_076 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
250 260 270
>>NP_001242914 (OMIM: 265050,612502) collectin-11 isofor (285 aa)
initn: 1862 init1: 1862 opt: 1862 Z-score: 1544.7 bits: 293.6 E(85289): 2.7e-79
Smith-Waterman score: 1862; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:15-285)
10 20 30 40
pF1KE6 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDA
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKKQRGVGVLPALRMRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 GEKGDKGAPGRPGRVGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEKGDKGAPGRPGRVGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 GEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 QLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFN
190 200 210 220 230 240
230 240 250 260 270
pF1KE6 KWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCEFDKENM
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 KWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCEFDKENM
250 260 270 280
>>NP_001242915 (OMIM: 265050,612502) collectin-11 isofor (245 aa)
initn: 1583 init1: 1583 opt: 1590 Z-score: 1322.4 bits: 252.3 E(85289): 6.4e-67
Smith-Waterman score: 1590; 94.3% identity (95.1% similar) in 247 aa overlap (25-271:6-245)
10 20 30 40 50 60
pF1KE6 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDAGEKGDKGAPGRPGR
:.: : :. : :::::::::::::::::
NP_001 MWWVPPSPYGCLPCA-------LPGDAGEKGDKGAPGRPGR
10 20 30
70 80 90 100 110 120
pF1KE6 VGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE6 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
160 170 180 190 200 210
250 260 270
pF1KE6 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
:::::::::::::::::::::::::::::::
NP_001 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
220 230 240
>>NP_001242916 (OMIM: 265050,612502) collectin-11 isofor (221 aa)
initn: 1405 init1: 1405 opt: 1416 Z-score: 1180.3 bits: 225.8 E(85289): 5.3e-59
Smith-Waterman score: 1416; 95.4% identity (95.9% similar) in 217 aa overlap (55-271:5-221)
30 40 50 60 70 80
pF1KE6 PQPAGDDACSVQILVPGLKGDAGEKGDKGAPGRPGRVGPTGEKGDMGDKGQKGSVGRHGK
: : : . :::::::::::::::::
NP_001 MWWVPPSPYGCLPCALPGDMGDKGQKGSVGRHGK
10 20 30
90 100 110 120 130 140
pF1KE6 IGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVA
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE6 GVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIG
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE6 INDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMC
160 170 180 190 200 210
270
pF1KE6 EFDKENM
:::::::
NP_001 EFDKENM
220
>>NP_001242911 (OMIM: 265050,612502) collectin-11 isofor (247 aa)
initn: 1416 init1: 1416 opt: 1416 Z-score: 1179.7 bits: 225.9 E(85289): 5.7e-59
Smith-Waterman score: 1630; 91.1% identity (91.1% similar) in 271 aa overlap (1-271:1-247)
10 20 30 40 50 60
pF1KE6 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDAGEKGDKGAPGRPGR
:::::::::::::::::::::::::::::::::::::::::::
NP_001 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLK-----------------
10 20 30 40
70 80 90 100 110 120
pF1KE6 VGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------GDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRK
50 60 70 80 90
130 140 150 160 170 180
pF1KE6 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE6 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
160 170 180 190 200 210
250 260 270
pF1KE6 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
:::::::::::::::::::::::::::::::
NP_001 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
220 230 240
>>XP_005263910 (OMIM: 265050,612502) PREDICTED: collecti (261 aa)
initn: 1416 init1: 1416 opt: 1416 Z-score: 1179.5 bits: 225.9 E(85289): 5.9e-59
Smith-Waterman score: 1630; 91.1% identity (91.1% similar) in 271 aa overlap (1-271:15-261)
10 20 30 40
pF1KE6 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDA
:::::::::::::::::::::::::::::::::::::::::::
XP_005 MKKQRGVGVLPALRMRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLK---
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 GEKGDKGAPGRPGRVGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPN
:::::::::::::::::::::::::::::::::::::::
XP_005 ---------------------GDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPN
60 70 80 90
110 120 130 140 150 160
pF1KE6 GEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADA
100 110 120 130 140 150
170 180 190 200 210 220
pF1KE6 QLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFN
160 170 180 190 200 210
230 240 250 260 270
pF1KE6 KWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCEFDKENM
:::::::::::::::::::::::::::::::::::::::::::::
XP_005 KWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCEFDKENM
220 230 240 250 260
>>NP_954705 (OMIM: 265050,612502) collectin-11 isoform b (268 aa)
initn: 1414 init1: 1414 opt: 1414 Z-score: 1177.7 bits: 225.6 E(85289): 7.4e-59
Smith-Waterman score: 1414; 99.0% identity (99.5% similar) in 207 aa overlap (65-271:62-268)
40 50 60 70 80 90
pF1KE6 VQILVPGLKGDAGEKGDKGAPGRPGRVGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEK
: .:::::::::::::::::::::::::::
NP_954 SAPREKKQSQPVVTASDISKRKCTSSFVEMGSQGDMGDKGQKGSVGRHGKIGPIGSKGEK
40 50 60 70 80 90
100 110 120 130 140 150
pF1KE6 GDSGDIGPPGPNGEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 GDSGDIGPPGPNGEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIY
100 110 120 130 140 150
160 170 180 190 200 210
pF1KE6 LLVKEEKRYADAQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 LLVKEEKRYADAQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAF
160 170 180 190 200 210
220 230 240 250 260 270
pF1KE6 VYSDHSPMRTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCEFDKENM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 VYSDHSPMRTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCEFDKENM
220 230 240 250 260
>>NP_001242917 (OMIM: 265050,612502) collectin-11 isofor (221 aa)
initn: 1344 init1: 1344 opt: 1355 Z-score: 1130.3 bits: 216.6 E(85289): 3.2e-56
Smith-Waterman score: 1362; 84.6% identity (85.4% similar) in 247 aa overlap (25-271:6-221)
10 20 30 40 50 60
pF1KE6 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDAGEKGDKGAPGRPGR
:.: : :. : :::::::::::::::::
NP_001 MWWVPPSPYGCLPCA-------LPGDAGEKGDKGAPGRPGR
10 20 30
70 80 90 100 110 120
pF1KE6 VGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRK
:::::::: ::::::::::::::::::::::::::::
NP_001 VGPTGEKG------------------------EKGDSGDIGPPGPNGEPGLPCECSQLRK
40 50 60 70
130 140 150 160 170 180
pF1KE6 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
80 90 100 110 120 130
190 200 210 220 230 240
pF1KE6 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
140 150 160 170 180 190
250 260 270
pF1KE6 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
:::::::::::::::::::::::::::::::
NP_001 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
200 210 220
>>NP_001242912 (OMIM: 265050,612502) collectin-11 isofor (247 aa)
initn: 1355 init1: 1355 opt: 1355 Z-score: 1129.7 bits: 216.6 E(85289): 3.5e-56
Smith-Waterman score: 1634; 91.1% identity (91.1% similar) in 271 aa overlap (1-271:1-247)
10 20 30 40 50 60
pF1KE6 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDAGEKGDKGAPGRPGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDAGEKGDKGAPGRPGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPNGEPGLPCECSQLRK
:::::::: ::::::::::::::::::::::::::::
NP_001 VGPTGEKG------------------------EKGDSGDIGPPGPNGEPGLPCECSQLRK
70 80 90
130 140 150 160 170 180
pF1KE6 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE6 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEE
160 170 180 190 200 210
250 260 270
pF1KE6 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
:::::::::::::::::::::::::::::::
NP_001 DCVEMVASGGWNDVACHTTMYFMCEFDKENM
220 230 240
>>XP_006711960 (OMIM: 265050,612502) PREDICTED: collecti (261 aa)
initn: 1355 init1: 1355 opt: 1355 Z-score: 1129.5 bits: 216.7 E(85289): 3.6e-56
Smith-Waterman score: 1634; 91.1% identity (91.1% similar) in 271 aa overlap (1-271:15-261)
10 20 30 40
pF1KE6 MRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDA
::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKKQRGVGVLPALRMRGNLALVGVLISLAFLSLLPSGHPQPAGDDACSVQILVPGLKGDA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 GEKGDKGAPGRPGRVGPTGEKGDMGDKGQKGSVGRHGKIGPIGSKGEKGDSGDIGPPGPN
:::::::::::::::::::::: ::::::::::::::
XP_006 GEKGDKGAPGRPGRVGPTGEKG------------------------EKGDSGDIGPPGPN
70 80 90
110 120 130 140 150 160
pF1KE6 GEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GEPGLPCECSQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYADA
100 110 120 130 140 150
170 180 190 200 210 220
pF1KE6 QLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFVYSDHSPMRTFN
160 170 180 190 200 210
230 240 250 260 270
pF1KE6 KWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCEFDKENM
:::::::::::::::::::::::::::::::::::::::::::::
XP_006 KWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCEFDKENM
220 230 240 250 260
271 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:42:22 2016 done: Tue Nov 8 14:42:23 2016
Total Scan time: 4.810 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]