FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6594, 72 aa
  1>>>pF1KE6594 72 - 72 aa - 72 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9698+/-0.000412; mu= 9.6963+/- 0.025
 mean_var=57.9722+/-11.622, 0's: 0 Z-trim(117.5): 2  B-trim: 98 in 1/50
 Lambda= 0.168447
 statistics sampled from 18283 (18285) to 18283 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.885), E-opt: 0.2 (0.562), width:  16
 Scan time:  1.160

The best scores are:                                      opt bits E(32554)
CCDS9910.1 COX8C gene_id:341947|Hs108|chr14        (  72)  492 126.0 1.9e-30


>>CCDS9910.1 COX8C gene_id:341947|Hs108|chr14             (72 aa)
 initn: 492 init1: 492 opt: 492  Z-score: 660.0  bits: 126.0 E(32554): 1.9e-30
Smith-Waterman score: 492; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)

               10        20        30        40        50        60
pF1KE6 MPLLRGRCPARRHYRRLALLGLQPAPRFAHSGPPRQRPLSAAEMAVGLVVFFTTFLTPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MPLLRGRCPARRHYRRLALLGLQPAPRFAHSGPPRQRPLSAAEMAVGLVVFFTTFLTPAA
               10        20        30        40        50        60

               70  
pF1KE6 YVLGNLKQFRRN
       ::::::::::::
CCDS99 YVLGNLKQFRRN
               70  




72 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:39:36 2016 done: Tue Nov  8 14:39:36 2016
 Total Scan time:  1.160 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]