FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6592, 202 aa
  1>>>pF1KE6592 202 - 202 aa - 202 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8839+/-0.000296; mu= 2.3592+/- 0.019
 mean_var=147.3198+/-29.248, 0's: 0 Z-trim(123.1): 1  B-trim: 592 in 1/59
 Lambda= 0.105668
 statistics sampled from 42426 (42429) to 42426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.497), width:  16
 Scan time:  5.680

The best scores are:                                      opt bits E(85289)
NP_997715 (OMIM: 609762,614077) biogenesis of lyso ( 202) 1321 211.8 6.1e-55


>>NP_997715 (OMIM: 609762,614077) biogenesis of lysosome  (202 aa)
 initn: 1321 init1: 1321 opt: 1321  Z-score: 1107.4  bits: 211.8 E(85289): 6.1e-55
Smith-Waterman score: 1321; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KE6 MASQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MASQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 AETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 DHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGC
              130       140       150       160       170       180

              190       200  
pF1KE6 RLLPDIRGVPGTEPEKDPGPRA
       ::::::::::::::::::::::
NP_997 RLLPDIRGVPGTEPEKDPGPRA
              190       200  




202 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:38:44 2016 done: Tue Nov  8 14:38:45 2016
 Total Scan time:  5.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]