FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6590, 181 aa
  1>>>pF1KE6590 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5415+/-0.000841; mu= 10.9944+/- 0.051
 mean_var=59.5725+/-12.170, 0's: 0 Z-trim(105.5): 15  B-trim: 0 in 0/49
 Lambda= 0.166169
 statistics sampled from 8483 (8485) to 8483 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.261), width:  16
 Scan time:  1.070

The best scores are:                                      opt bits E(32554)
CCDS47313.1 IRGM gene_id:345611|Hs108|chr5         ( 181) 1167 288.0 2.1e-78
CCDS12629.1 IRGC gene_id:56269|Hs108|chr19         ( 463)  300 80.3 1.9e-15


>>CCDS47313.1 IRGM gene_id:345611|Hs108|chr5              (181 aa)
 initn: 1167 init1: 1167 opt: 1167  Z-score: 1520.9  bits: 288.0 E(32554): 2.1e-78
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE6 MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERVCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERVCE
              130       140       150       160       170       180

        
pF1KE6 Y
       :
CCDS47 Y
        

>>CCDS12629.1 IRGC gene_id:56269|Hs108|chr19              (463 aa)
 initn: 320 init1: 240 opt: 300  Z-score: 390.9  bits: 80.3 E(32554): 1.9e-15
Smith-Waterman score: 300; 32.4% identity (66.0% similar) in 188 aa overlap (1-180:24-209)

                                      10        20        30       
pF1KE6                        MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNIT
                              .::. .  :  .:.::.. :...: :  .    ... 
CCDS12 MATSKLPVVPGEEENTILMAKERLEALRT--AFESGDLPQAASHLQELLASTESIRLEVG
               10        20          30        40        50        

        40        50        60        70        80        90       
pF1KE6 MAGDSGNGMSTFISALRNTGHEGKASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSA
       ..:.:: : :..:.:::.   :  ..  : ....:.. . :   .: .:.::::::.:: 
CCDS12 VTGESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSP
       60        70        80        90       100       110        

       100       110       120        130       140       150      
pF1KE6 TTTLENYLMEMQFNRYDFIMVASAQ-FSMNHVMLAKTAEDMGKKFYIVWTKLDMDLST--
           ..:: ...:.::::....: .  .  .. ::     .:::::.: ::.: ::..  
CCDS12 GCPADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATR
      120       130       140       150       160       170        

              160        170       180                             
pF1KE6 ----GALPEVQLLQ-IRENVLENLQKERVCEY                            
           ... :. .:: ::..  : :..  : .                             
CCDS12 TQRPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNLSPARYDFPTLVSTWEHDLPS
      180       190       200       210       220       230        

CCDS12 HRRHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQALPVPGLAAAYDDALLIHSL
      240       250       260       270       280       290        




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:38:16 2016 done: Tue Nov  8 14:38:17 2016
 Total Scan time:  1.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]