FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6589, 178 aa
  1>>>pF1KE6589 178 - 178 aa - 178 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9731+/-0.00026; mu= 15.8233+/- 0.016
 mean_var=80.2773+/-15.985, 0's: 0 Z-trim(122.2): 12  B-trim: 1145 in 1/54
 Lambda= 0.143146
 statistics sampled from 39869 (39881) to 39869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.468), width:  16
 Scan time:  4.490

The best scores are:                                      opt bits E(85289)
NP_001119521 (OMIM: 612105,615107) killin [Homo sa ( 178) 1303 277.4 8.5e-75


>>NP_001119521 (OMIM: 612105,615107) killin [Homo sapien  (178 aa)
 initn: 1303 init1: 1303 opt: 1303  Z-score: 1463.8  bits: 277.4 E(85289): 8.5e-75
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KE6 MDRPGPGSARPGRTVHVWGYRVEWKVRNGRKLQPSEWAGRGDLGGFKRRWKDTRATVGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDRPGPGSARPGRTVHVWGYRVEWKVRNGRKLQPSEWAGRGDLGGFKRRWKDTRATVGTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FRRRSRVSLVGELSKFPLPSDSSGGKSSSSFARGALAWCRQRNPNPSCAAAETGARTSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRRRSRVSLVGELSKFPLPSDSSGGKSSSSFARGALAWCRQRNPNPSCAAAETGARTSLP
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KE6 KERCRGWRLGNWLHKHPHPNTCPRLPACWLPPILTERGERVPKLVPLLACYPKSKPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KERCRGWRLGNWLHKHPHPNTCPRLPACWLPPILTERGERVPKLVPLLACYPKSKPKD
              130       140       150       160       170        




178 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:37:45 2016 done: Tue Nov  8 14:37:45 2016
 Total Scan time:  4.490 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]