FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6589, 178 aa
  1>>>pF1KE6589 178 - 178 aa - 178 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0253+/-0.000545; mu= 15.3482+/- 0.033
 mean_var=78.5442+/-15.549, 0's: 0 Z-trim(115.2): 10  B-trim: 71 in 1/51
 Lambda= 0.144716
 statistics sampled from 15755 (15758) to 15755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.484), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS44454.1 KLLN gene_id:100144748|Hs108|chr10     ( 178) 1303 280.2 4.5e-76


>>CCDS44454.1 KLLN gene_id:100144748|Hs108|chr10          (178 aa)
 initn: 1303 init1: 1303 opt: 1303  Z-score: 1479.2  bits: 280.2 E(32554): 4.5e-76
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KE6 MDRPGPGSARPGRTVHVWGYRVEWKVRNGRKLQPSEWAGRGDLGGFKRRWKDTRATVGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDRPGPGSARPGRTVHVWGYRVEWKVRNGRKLQPSEWAGRGDLGGFKRRWKDTRATVGTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FRRRSRVSLVGELSKFPLPSDSSGGKSSSSFARGALAWCRQRNPNPSCAAAETGARTSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FRRRSRVSLVGELSKFPLPSDSSGGKSSSSFARGALAWCRQRNPNPSCAAAETGARTSLP
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KE6 KERCRGWRLGNWLHKHPHPNTCPRLPACWLPPILTERGERVPKLVPLLACYPKSKPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KERCRGWRLGNWLHKHPHPNTCPRLPACWLPPILTERGERVPKLVPLLACYPKSKPKD
              130       140       150       160       170        




178 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:37:44 2016 done: Tue Nov  8 14:37:44 2016
 Total Scan time:  1.520 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]