FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6587, 175 aa
  1>>>pF1KE6587 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7618+/-0.000599; mu= 7.4794+/- 0.036
 mean_var=116.4511+/-23.224, 0's: 0 Z-trim(116.5): 3  B-trim: 0 in 0/54
 Lambda= 0.118851
 statistics sampled from 17178 (17179) to 17178 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.849), E-opt: 0.2 (0.528), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS45229.1 C15orf62 gene_id:643338|Hs108|chr15    ( 175) 1185 212.6   1e-55


>>CCDS45229.1 C15orf62 gene_id:643338|Hs108|chr15         (175 aa)
 initn: 1185 init1: 1185 opt: 1185  Z-score: 1113.8  bits: 212.6 E(32554): 1e-55
Smith-Waterman score: 1185; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KE6 METWRKGSFRNASFFKQLSLGRPRRLRRQSSVLSQASTAGGDHEEYSNREVIRELQGRPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 METWRKGSFRNASFFKQLSLGRPRRLRRQSSVLSQASTAGGDHEEYSNREVIRELQGRPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GRRLPLWGDEQPRATLLAPPKPPRLYRESSSCPNILEPPPAYTAAYSATLPSALSLSSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GRRLPLWGDEQPRATLLAPPKPPRLYRESSSCPNILEPPPAYTAAYSATLPSALSLSSAL
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KE6 HQHSEKGLVDTPCFQRTPTPDLSDPFLSFKVDLGISLLEEVLQMLREQFPSEPSF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HQHSEKGLVDTPCFQRTPTPDLSDPFLSFKVDLGISLLEEVLQMLREQFPSEPSF
              130       140       150       160       170     




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:36:37 2016 done: Tue Nov  8 14:36:37 2016
 Total Scan time:  1.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]