FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6577, 71 aa
  1>>>pF1KE6577 71 - 71 aa - 71 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7653+/-0.000461; mu= 9.9350+/- 0.028
 mean_var=50.5627+/- 9.925, 0's: 0 Z-trim(114.9): 5  B-trim: 0 in 0/51
 Lambda= 0.180368
 statistics sampled from 15479 (15484) to 15479 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.476), width:  16
 Scan time:  1.140

The best scores are:                                      opt bits E(32554)
CCDS55108.1 CCM2 gene_id:83605|Hs108|chr7          ( 353)  441 121.4 2.3e-28
CCDS5500.1 CCM2 gene_id:83605|Hs108|chr7           ( 444)  441 121.5 2.8e-28
CCDS34630.1 CCM2 gene_id:83605|Hs108|chr7          ( 465)  377 104.8   3e-23


>>CCDS55108.1 CCM2 gene_id:83605|Hs108|chr7               (353 aa)
 initn: 441 init1: 441 opt: 441  Z-score: 622.7  bits: 121.4 E(32554): 2.3e-28
Smith-Waterman score: 441; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS
               10        20        30        40        50        60

               70                                                  
pF1KE6 DYIEKEVKGSH                                                 
       ::::::::                                                    
CCDS55 DYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVLSLSAYNV
               70        80        90       100       110       120

>>CCDS5500.1 CCM2 gene_id:83605|Hs108|chr7                (444 aa)
 initn: 441 init1: 441 opt: 441  Z-score: 621.2  bits: 121.5 E(32554): 2.8e-28
Smith-Waterman score: 441; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS
               10        20        30        40        50        60

               70                                                  
pF1KE6 DYIEKEVKGSH                                                 
       ::::::::                                                    
CCDS55 DYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVLSLSAYNV
               70        80        90       100       110       120

>>CCDS34630.1 CCM2 gene_id:83605|Hs108|chr7               (465 aa)
 initn: 377 init1: 377 opt: 377  Z-score: 530.8  bits: 104.8 E(32554): 3e-23
Smith-Waterman score: 377; 98.3% identity (100.0% similar) in 59 aa overlap (10-68:31-89)

                                    10        20        30         
pF1KE6                      MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTER
                                     .:::::::::::::::::::::::::::::
CCDS34 MHSSCRQRRNQNLSKEIPQTEFHTGYSMENEPGIVSPFKRVFLKGEKSRDKKAHEKVTER
               10        20        30        40        50        60

      40        50        60        70                             
pF1KE6 RPLHTVVLSLPERVEPDRLLSDYIEKEVKGSH                            
       :::::::::::::::::::::::::::::                               
CCDS34 RPLHTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAH
               70        80        90       100       110       120




71 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:32:45 2016 done: Tue Nov  8 14:32:45 2016
 Total Scan time:  1.140 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]