Result of FASTA (omim) for
pFN21AE6576
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6576, 107 aa
1>>>pF1KE6576 107 - 107 aa - 107 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0282+/-0.000239; mu= 12.3889+/- 0.015
mean_var=70.7232+/-14.113, 0's: 0 Z-trim(123.0): 63 B-trim: 197 in 1/54
Lambda= 0.152508
statistics sampled from 42102 (42165) to 42102 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.494), width: 16
Scan time: 4.280
The best scores are: opt bits E(85289)
NP_001242975 (OMIM: 614297,614298,615043) protein ( 107) 740 170.3 5.5e-43
NP_001242976 (OMIM: 614297,614298,615043) protein ( 141) 636 147.5 5.2e-36
NP_113636 (OMIM: 614297,614298,615043) protein C19 ( 141) 636 147.5 5.2e-36
NP_001026896 (OMIM: 614297,614298,615043) protein ( 152) 636 147.5 5.5e-36
NP_001269860 (OMIM: 614297,614298,615043) protein ( 77) 216 54.9 2.2e-08
NP_001269858 (OMIM: 614297,614298,615043) protein ( 77) 216 54.9 2.2e-08
NP_001269859 (OMIM: 614297,614298,615043) protein ( 77) 216 54.9 2.2e-08
>>NP_001242975 (OMIM: 614297,614298,615043) protein C19o (107 aa)
initn: 740 init1: 740 opt: 740 Z-score: 892.8 bits: 170.3 E(85289): 5.5e-43
Smith-Waterman score: 740; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
10 20 30 40 50 60
70 80 90 100
pF1KE6 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW
70 80 90 100
>>NP_001242976 (OMIM: 614297,614298,615043) protein C19o (141 aa)
initn: 636 init1: 636 opt: 636 Z-score: 767.4 bits: 147.5 E(85289): 5.2e-36
Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)
10 20 30 40 50 60
pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
10 20 30 40 50 60
70 80 90 100
pF1KE6 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW
:::::::::::::::::::::::::::::::::::::
NP_001 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTALVMGSEALQQQ
70 80 90 100 110 120
NP_001 LLAMLVNYVTKELRAEIQYDD
130 140
>>NP_113636 (OMIM: 614297,614298,615043) protein C19orf1 (141 aa)
initn: 636 init1: 636 opt: 636 Z-score: 767.4 bits: 147.5 E(85289): 5.2e-36
Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)
10 20 30 40 50 60
pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
10 20 30 40 50 60
70 80 90 100
pF1KE6 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW
:::::::::::::::::::::::::::::::::::::
NP_113 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTALVMGSEALQQQ
70 80 90 100 110 120
NP_113 LLAMLVNYVTKELRAEIQYDD
130 140
>>NP_001026896 (OMIM: 614297,614298,615043) protein C19o (152 aa)
initn: 636 init1: 636 opt: 636 Z-score: 767.0 bits: 147.5 E(85289): 5.5e-36
Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:12-108)
10 20 30 40
pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPP
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERLKSHKPATMTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 GLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTA
70 80 90 100 110 120
NP_001 LVMGSEALQQQLLAMLVNYVTKELRAEIQYDD
130 140 150
>>NP_001269860 (OMIM: 614297,614298,615043) protein C19o (77 aa)
initn: 216 init1: 216 opt: 216 Z-score: 271.6 bits: 54.9 E(85289): 2.2e-08
Smith-Waterman score: 216; 100.0% identity (100.0% similar) in 33 aa overlap (65-97:1-33)
40 50 60 70 80 90
pF1KE6 TGAMAFVGGLVGGPPGLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAA
::::::::::::::::::::::::::::::
NP_001 MTSGQFKPVPQILMELPPAEQQRLFNEAAA
10 20 30
100
pF1KE6 IIRPCSSSCWPCW
:::
NP_001 IIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTKELRAEIQYDD
40 50 60 70
>>NP_001269858 (OMIM: 614297,614298,615043) protein C19o (77 aa)
initn: 216 init1: 216 opt: 216 Z-score: 271.6 bits: 54.9 E(85289): 2.2e-08
Smith-Waterman score: 216; 100.0% identity (100.0% similar) in 33 aa overlap (65-97:1-33)
40 50 60 70 80 90
pF1KE6 TGAMAFVGGLVGGPPGLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAA
::::::::::::::::::::::::::::::
NP_001 MTSGQFKPVPQILMELPPAEQQRLFNEAAA
10 20 30
100
pF1KE6 IIRPCSSSCWPCW
:::
NP_001 IIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTKELRAEIQYDD
40 50 60 70
>>NP_001269859 (OMIM: 614297,614298,615043) protein C19o (77 aa)
initn: 216 init1: 216 opt: 216 Z-score: 271.6 bits: 54.9 E(85289): 2.2e-08
Smith-Waterman score: 216; 100.0% identity (100.0% similar) in 33 aa overlap (65-97:1-33)
40 50 60 70 80 90
pF1KE6 TGAMAFVGGLVGGPPGLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAA
::::::::::::::::::::::::::::::
NP_001 MTSGQFKPVPQILMELPPAEQQRLFNEAAA
10 20 30
100
pF1KE6 IIRPCSSSCWPCW
:::
NP_001 IIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTKELRAEIQYDD
40 50 60 70
107 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:32:21 2016 done: Tue Nov 8 14:32:21 2016
Total Scan time: 4.280 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]