FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6575, 195 aa
  1>>>pF1KE6575 195 - 195 aa - 195 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0353+/-0.000305; mu= 9.9736+/- 0.019
 mean_var=83.5480+/-16.597, 0's: 0 Z-trim(119.0): 35  B-trim: 934 in 1/52
 Lambda= 0.140316
 statistics sampled from 32496 (32531) to 32496 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.381), width:  16
 Scan time:  4.770

The best scores are:                                      opt bits E(85289)
NP_898882 (OMIM: 180040,610612) protein RD3 [Homo  ( 195) 1299 271.9 4.5e-73
NP_001158160 (OMIM: 180040,610612) protein RD3 [Ho ( 195) 1299 271.9 4.5e-73
XP_016856640 (OMIM: 180040,610612) PREDICTED: prot ( 207) 1299 272.0 4.7e-73


>>NP_898882 (OMIM: 180040,610612) protein RD3 [Homo sapi  (195 aa)
 initn: 1299 init1: 1299 opt: 1299  Z-score: 1432.9  bits: 271.9 E(85289): 4.5e-73
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE6 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_898 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP
              130       140       150       160       170       180

              190     
pF1KE6 LRSWSMPEFRAPKAD
       :::::::::::::::
NP_898 LRSWSMPEFRAPKAD
              190     

>>NP_001158160 (OMIM: 180040,610612) protein RD3 [Homo s  (195 aa)
 initn: 1299 init1: 1299 opt: 1299  Z-score: 1432.9  bits: 271.9 E(85289): 4.5e-73
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE6 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP
              130       140       150       160       170       180

              190     
pF1KE6 LRSWSMPEFRAPKAD
       :::::::::::::::
NP_001 LRSWSMPEFRAPKAD
              190     

>>XP_016856640 (OMIM: 180040,610612) PREDICTED: protein   (207 aa)
 initn: 1299 init1: 1299 opt: 1299  Z-score: 1432.5  bits: 272.0 E(85289): 4.7e-73
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:13-207)

                           10        20        30        40        
pF1KE6             MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERS
                   ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MHICPVSAGPGAMSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERS
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KE6 NAVRKVCTGVDYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAVRKVCTGVDYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQE
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KE6 PEVQEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEVQEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRT
              130       140       150       160       170       180

      170       180       190     
pF1KE6 ISEDVERDTPPPLRSWSMPEFRAPKAD
       :::::::::::::::::::::::::::
XP_016 ISEDVERDTPPPLRSWSMPEFRAPKAD
              190       200       




195 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:31:48 2016 done: Tue Nov  8 14:31:49 2016
 Total Scan time:  4.770 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]