FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6575, 195 aa
  1>>>pF1KE6575 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7751+/-0.000657; mu= 11.4983+/- 0.040
 mean_var=78.6326+/-15.809, 0's: 0 Z-trim(111.7): 15  B-trim: 0 in 0/52
 Lambda= 0.144635
 statistics sampled from 12615 (12620) to 12615 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.388), width:  16
 Scan time:  1.410

The best scores are:                                      opt bits E(32554)
CCDS1498.1 RD3 gene_id:343035|Hs108|chr1           ( 195) 1299 279.7 7.8e-76
CCDS58338.1 RD3L gene_id:647286|Hs108|chr14        ( 198)  275 66.0 1.6e-11


>>CCDS1498.1 RD3 gene_id:343035|Hs108|chr1                (195 aa)
 initn: 1299 init1: 1299 opt: 1299  Z-score: 1475.0  bits: 279.7 E(32554): 7.8e-76
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE6 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP
              130       140       150       160       170       180

              190     
pF1KE6 LRSWSMPEFRAPKAD
       :::::::::::::::
CCDS14 LRSWSMPEFRAPKAD
              190     

>>CCDS58338.1 RD3L gene_id:647286|Hs108|chr14             (198 aa)
 initn: 231 init1: 197 opt: 275  Z-score: 320.1  bits: 66.0 E(32554): 1.6e-11
Smith-Waterman score: 275; 29.8% identity (58.1% similar) in 198 aa overlap (1-189:1-194)

               10        20         30        40        50         
pF1KE6 MSLISWLRWNEAPSRLSTRSP-AEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVD
       : :..:..: .  :   :. : ...: .::. ::  ...: ::  .:  :  .   ::::
CCDS58 MPLFGWMKWPKNDSYKPTHYPGSDIVTKTLLRELKWHLKERERLIQEIENEQKVKKTGVD
               10        20        30        40        50        60

      60          70        80        90       100       110       
pF1KE6 YSWLAS--TPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQL
       :.:: .  .:..:  ..  :. ::: .: ...:   :  . :::..:::..    :.  .
CCDS58 YNWLRNYQNPHTTIPVT--EQRQLEVLCSQVQPCQTGTILSRFREVLAENDVLPWEIVYI
               70          80        90       100       110        

       120       130       140        150       160       170      
pF1KE6 FRSVLQEVLERMKQEEEAHKLTRQWSLRPRG-SLATFKTRARISPFASDIRTISEDVERD
       :..::.. :    .  : . :  . :.   . :.    .  : .   ..: :::  :...
CCDS58 FKQVLKDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRAD--KDEIPTISSYVDKN
      120       130       140       150       160         170      

          180          190     
pF1KE6 TPP--PL---RSWSMPEFRAPKAD
       :    :.   : :..: .      
CCDS58 TKDRFPVFSHRIWNLPYYHPSS  
        180       190          




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:31:47 2016 done: Tue Nov  8 14:31:48 2016
 Total Scan time:  1.410 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]