FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6572, 123 aa
  1>>>pF1KE6572 123 - 123 aa - 123 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8510+/-0.00057; mu= 13.0144+/- 0.034
 mean_var=56.7681+/-11.389, 0's: 0 Z-trim(111.6): 5  B-trim: 0 in 0/50
 Lambda= 0.170224
 statistics sampled from 12473 (12476) to 12473 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.383), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS8183.1 GAL gene_id:51083|Hs108|chr11           ( 123)  791 201.4 1.1e-52


>>CCDS8183.1 GAL gene_id:51083|Hs108|chr11                (123 aa)
 initn: 791 init1: 791 opt: 791  Z-score: 1059.1  bits: 201.4 E(32554): 1.1e-52
Smith-Waterman score: 791; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KE6 MARGSALLLASLLLAAALSASAGLWSPAKEKRGWTLNSAGYLLGPHAVGNHRSFSDKNGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MARGSALLLASLLLAAALSASAGLWSPAKEKRGWTLNSAGYLLGPHAVGNHRSFSDKNGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSKRELRPEDDMKPGSFDRSIPENNIMRTIIEFLSFLHLKEAGALDRLLDLPAAASSEDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TSKRELRPEDDMKPGSFDRSIPENNIMRTIIEFLSFLHLKEAGALDRLLDLPAAASSEDI
               70        80        90       100       110       120

          
pF1KE6 ERS
       :::
CCDS81 ERS
          




123 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:30:49 2016 done: Tue Nov  8 14:30:49 2016
 Total Scan time:  1.500 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]