FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6571, 145 aa
  1>>>pF1KE6571 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0321+/-0.000293; mu= 12.6804+/- 0.018
 mean_var=60.5845+/-12.361, 0's: 0 Z-trim(118.3): 3  B-trim: 1097 in 2/50
 Lambda= 0.164776
 statistics sampled from 31029 (31032) to 31029 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.364), width:  16
 Scan time:  4.510

The best scores are:                                      opt bits E(85289)
NP_061326 (OMIM: 256000,614530) NADH dehydrogenase ( 145) 1028 252.1 2.4e-67
NP_001245267 (OMIM: 256000,614530) NADH dehydrogen (  63)  382 98.3   2e-21
NP_777549 (OMIM: 252010,256000,609653) mimitin, mi ( 169)  130 38.6  0.0049


>>NP_061326 (OMIM: 256000,614530) NADH dehydrogenase [ub  (145 aa)
 initn: 1028 init1: 1028 opt: 1028  Z-score: 1330.1  bits: 252.1 E(85289): 2.4e-67
Smith-Waterman score: 1028; 99.3% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE6 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLAARKFIWTNHKFNVTGT
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
NP_061 WVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGT
               70        80        90       100       110       120

              130       140     
pF1KE6 PEQYVPYSTTRKKIQEWIPPSTPYK
       :::::::::::::::::::::::::
NP_061 PEQYVPYSTTRKKIQEWIPPSTPYK
              130       140     

>>NP_001245267 (OMIM: 256000,614530) NADH dehydrogenase   (63 aa)
 initn: 382 init1: 382 opt: 382  Z-score: 505.6  bits: 98.3 E(85289): 2e-21
Smith-Waterman score: 382; 100.0% identity (100.0% similar) in 57 aa overlap (1-57:1-57)

               10        20        30        40        50        60
pF1KE6 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_001 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGIVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLAARKFIWTNHKFNVTGT
                                                                   
NP_001 FTV                                                         
                                                                   

>>NP_777549 (OMIM: 252010,256000,609653) mimitin, mitoch  (169 aa)
 initn: 122 init1:  63 opt: 130  Z-score: 175.4  bits: 38.6 E(85289): 0.0049
Smith-Waterman score: 130; 23.1% identity (55.4% similar) in 130 aa overlap (18-140:2-123)

               10        20        30        40          50        
pF1KE6 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYY--EDNKQFFG-
                        :  .  .:...:. . .:   :: :..:::::   . :.. : 
NP_777                 MGWSQDLFRALWRSLSREVKEHVGTDQFGNKYYYIPQYKNWRGQ
                               10        20        30        40    

          60        70        80        90       100       110     
pF1KE6 --RHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLAARKFIWTNHKF
         :.. .: ..  : :..  : ... .: ::. :..     ::: . .   .    .:. 
NP_777 TIREKRIVEAA--NKKEV--DYEAGDIPTEWEAWIRRTRKTPPTMEEILKNE----KHRE
           50          60          70        80        90          

         120         130       140                                 
pF1KE6 NVTGTPEQYVPYST--TRKKIQEWIPPSTPYK                            
       ..    ...       ...  .: .::                                 
NP_777 EIKIKSQDFYEKEKLLSKETSEELLPPPVQTQIKGHASAPYFGKEEPSVAPSSTGKTFQP
        100       110       120       130       140       150      




145 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:30:22 2016 done: Tue Nov  8 14:30:23 2016
 Total Scan time:  4.510 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]