FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6569, 213 aa
  1>>>pF1KE6569 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1760+/-0.000536; mu= 15.9203+/- 0.032
 mean_var=79.6972+/-16.008, 0's: 0 Z-trim(115.0): 11  B-trim: 92 in 1/52
 Lambda= 0.143666
 statistics sampled from 15529 (15540) to 15529 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.477), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS11468.1 SOST gene_id:50964|Hs108|chr17         ( 213) 1519 323.2 7.8e-89
CCDS5360.1 SOSTDC1 gene_id:25928|Hs108|chr7        ( 206)  462 104.1 6.7e-23


>>CCDS11468.1 SOST gene_id:50964|Hs108|chr17              (213 aa)
 initn: 1519 init1: 1519 opt: 1519  Z-score: 1708.4  bits: 323.2 E(32554): 7.8e-89
Smith-Waterman score: 1519; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE6 MQLPLALCLVCLLVHTAFRVVEGQGWQAFKNDATEIIPELGEYPEPPPELENNKTMNRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQLPLALCLVCLLVHTAFRVVEGQGWQAFKNDATEIIPELGEYPEPPPELENNKTMNRAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NGGRPPHHPFETKDVSEYSCRELHFTRYVTDGPCRSAKPVTELVCSGQCGPARLLPNAIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NGGRPPHHPFETKDVSEYSCRELHFTRYVTDGPCRSAKPVTELVCSGQCGPARLLPNAIG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 RGKWWRPSGPDFRCIPDRYRAQRVQLLCPGGEAPRARKVRLVASCKCKRLTRFHNQSELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RGKWWRPSGPDFRCIPDRYRAQRVQLLCPGGEAPRARKVRLVASCKCKRLTRFHNQSELK
              130       140       150       160       170       180

              190       200       210   
pF1KE6 DFGTEAARPQKGRKPRPRARSAKANQAELENAY
       :::::::::::::::::::::::::::::::::
CCDS11 DFGTEAARPQKGRKPRPRARSAKANQAELENAY
              190       200       210   

>>CCDS5360.1 SOSTDC1 gene_id:25928|Hs108|chr7             (206 aa)
 initn: 469 init1: 227 opt: 462  Z-score: 524.6  bits: 104.1 E(32554): 6.7e-23
Smith-Waterman score: 464; 39.9% identity (65.4% similar) in 208 aa overlap (3-203:11-202)

                       10        20        30        40         50 
pF1KE6         MQLPLALCLVCLLVHTAFRVVEGQGWQAFKNDATEIIPELGEYPEP-PPELE
                 ::::    :.:... .         :::::::::.   ..  .: : .  
CCDS53 MLPPAIHFYLLPLA----CILMKSCL---------AFKNDATEIL--YSHVVKPVPAHPS
               10            20                 30          40     

              60         70        80        90       100       110
pF1KE6 NNKTMNRAENGGRP-PHHPFETKDVSEYSCRELHFTRYVTDGPCRSAKPVTELVCSGQCG
       .:.:.:.:.::::   .  .. .   . .::::. :.:..:: : : .:. ::::.:.: 
CCDS53 SNSTLNQARNGGRHFSNTGLDRNTRVQVGCRELRSTKYISDGQCTSISPLKELVCAGECL
          50        60        70        80        90       100     

              120           130       140       150       160      
pF1KE6 PARLLPNAIGRG---KWW-RPSGPDFRCIPDRYRAQRVQLLCPGGEAPRARKVRLVASCK
       :  .::: :: :   :.: : :. ..::. :. :.::.:: :  : . :. :. .:..::
CCDS53 PLPVLPNWIGGGYGTKYWSRRSSQEWRCVNDKTRTQRIQLQCQDG-STRTYKITVVTACK
         110       120       130       140       150        160    

        170       180       190        200       210   
pF1KE6 CKRLTRFHNQSELKDFGTEAARPQKGRKPRPRA-RSAKANQAELENAY
       ::: :: ::.:  .  .   :.: . .. : :: .:.:          
CCDS53 CKRYTRQHNESSHNFESMSPAKPVQHHRERKRASKSSKHSMS      
          170       180       190       200            




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:51:20 2016 done: Tue Nov  8 10:51:20 2016
 Total Scan time:  1.790 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]