FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6568, 188 aa
  1>>>pF1KE6568 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9096+/-0.000422; mu= 15.0497+/- 0.026
 mean_var=61.6150+/-13.003, 0's: 0 Z-trim(110.4): 36  B-trim: 0 in 0/53
 Lambda= 0.163392
 statistics sampled from 18755 (18778) to 18755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.22), width:  16
 Scan time:  3.420

The best scores are:                                      opt bits E(85289)
NP_006398 (OMIM: 605709) PRA1 family protein 3 [Ho ( 188) 1233 299.2 2.6e-81
NP_009144 (OMIM: 300840) PRA1 family protein 2 [Ho ( 178)  548 137.7   1e-32
NP_006414 (OMIM: 604925) prenylated Rab acceptor p ( 185)  135 40.3  0.0021


>>NP_006398 (OMIM: 605709) PRA1 family protein 3 [Homo s  (188 aa)
 initn: 1233 init1: 1233 opt: 1233  Z-score: 1580.7  bits: 299.2 E(85289): 2.6e-81
Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE6 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT
              130       140       150       160       170       180

               
pF1KE6 DYISKVKE
       ::::::::
NP_006 DYISKVKE
               

>>NP_009144 (OMIM: 300840) PRA1 family protein 2 [Homo s  (178 aa)
 initn: 541 init1: 541 opt: 548  Z-score: 708.3  bits: 137.7 E(85289): 1e-32
Smith-Waterman score: 548; 45.7% identity (82.7% similar) in 173 aa overlap (2-174:3-175)

                10        20        30        40        50         
pF1KE6  MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVG
         .: . :::: :::  :: :.: ::  : ..: .::..::::::::::.  .. ....:
NP_009 MSEVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAG
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE6 FLSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGV
       .. :.. .:...::....  .::::... ..:: .. .:.. . .:. .. ... . ::.
NP_009 YVRPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE6 MVFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRL
        .:.:.:. :.::...::::::::::::.:::.:.:::::::::..:.:: :..:     
NP_009 CTFLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS  
              130       140       150       160       170          

     180        
pF1KE6 TDYISKVKE

>>NP_006414 (OMIM: 604925) prenylated Rab acceptor prote  (185 aa)
 initn: 123 init1:  78 opt: 135  Z-score: 182.0  bits: 40.3 E(85289): 0.0021
Smith-Waterman score: 135; 23.7% identity (58.6% similar) in 152 aa overlap (6-155:40-185)

                                        10        20        30     
pF1KE6                          MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNR
                                     : .: :. :   ..::.::  :....  .:
NP_006 DAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVD-QQRFSRP--RNLGELCQR
      10        20        30        40        50           60      

          40        50        60        70        80        90     
pF1KE6 VVSNLLYYQTNYLVVAAMMISIVGFLSPFNMILGGIVVVLVFTGFVWAAHNKDVL--RRM
       .: :. :::.::. :   .:      ::. ..  ..     .  .. . ..: ::  :..
NP_006 LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLFGREV
         70        80        90       100       110       120      

           100       110       120       130       140       150   
pF1KE6 KKRYPTTFVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKME
       .  .  ...  . .  .: ..  :... .:.: :  :...  ::...  .  .  : .::
NP_006 SPAHQYALAGGISFP-FFWLAGAGSAVFWVLGAT--LVVIGSHAAFHQIEAVDGEELQME
        130       140        150         160       170       180   

           160       170       180        
pF1KE6 GIGLKRTPMGIVLDALEQQEEGINRLTDYISKVKE
        .                                 
NP_006 PV                                 
                                          




188 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:29:06 2016 done: Tue Nov  8 14:29:07 2016
 Total Scan time:  3.420 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]