FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6568, 188 aa
  1>>>pF1KE6568 188 - 188 aa - 188 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8427+/-0.000978; mu= 15.5301+/- 0.058
 mean_var=61.9813+/-13.090, 0's: 0 Z-trim(103.8): 19  B-trim: 0 in 0/49
 Lambda= 0.162909
 statistics sampled from 7575 (7583) to 7575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.233), width:  16
 Scan time:  1.140

The best scores are:                                      opt bits E(32554)
CCDS2912.1 ARL6IP5 gene_id:10550|Hs108|chr3        ( 188) 1233 298.2 1.9e-81
CCDS14317.1 PRAF2 gene_id:11230|Hs108|chrX         ( 178)  548 137.2 5.4e-33


>>CCDS2912.1 ARL6IP5 gene_id:10550|Hs108|chr3             (188 aa)
 initn: 1233 init1: 1233 opt: 1233  Z-score: 1575.6  bits: 298.2 E(32554): 1.9e-81
Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE6 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT
              130       140       150       160       170       180

               
pF1KE6 DYISKVKE
       ::::::::
CCDS29 DYISKVKE
               

>>CCDS14317.1 PRAF2 gene_id:11230|Hs108|chrX              (178 aa)
 initn: 541 init1: 541 opt: 548  Z-score: 705.8  bits: 137.2 E(32554): 5.4e-33
Smith-Waterman score: 548; 45.7% identity (82.7% similar) in 173 aa overlap (2-174:3-175)

                10        20        30        40        50         
pF1KE6  MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVG
         .: . :::: :::  :: :.: ::  : ..: .::..::::::::::.  .. ....:
CCDS14 MSEVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAG
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE6 FLSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGV
       .. :.. .:...::....  .::::... ..:: .. .:.. . .:. .. ... . ::.
CCDS14 YVRPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE6 MVFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRL
        .:.:.:. :.::...::::::::::::.:::.:.:::::::::..:.:: :..:     
CCDS14 CTFLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS  
              130       140       150       160       170          

     180        
pF1KE6 TDYISKVKE




188 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:29:06 2016 done: Tue Nov  8 14:29:06 2016
 Total Scan time:  1.140 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]