FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6567, 181 aa
  1>>>pF1KE6567 181 - 181 aa - 181 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0820+/-0.000298; mu= 3.0703+/- 0.019
 mean_var=231.5074+/-47.352, 0's: 0 Z-trim(125.3): 7  B-trim: 2742 in 1/60
 Lambda= 0.084293
 statistics sampled from 48703 (48710) to 48703 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.571), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(85289)
NP_001135392 (OMIM: 300879) glycoprotein Xg isofor ( 181) 1333 173.3 1.9e-43
NP_780778 (OMIM: 300879) glycoprotein Xg isoform 1 ( 180) 1316 171.2 8.1e-43
XP_005274644 (OMIM: 300879) PREDICTED: glycoprotei ( 196)  984 130.9 1.2e-30
NP_001135391 (OMIM: 300879) glycoprotein Xg isofor ( 195)  967 128.8 5.1e-30
XP_011543877 (OMIM: 300879) PREDICTED: glycoprotei ( 130)  960 127.8   7e-30
XP_016885276 (OMIM: 300879) PREDICTED: glycoprotei ( 182)  722 99.0 4.6e-21


>>NP_001135392 (OMIM: 300879) glycoprotein Xg isoform 3   (181 aa)
 initn: 1333 init1: 1333 opt: 1333  Z-score: 900.8  bits: 173.3 E(85289): 1.9e-43
Smith-Waterman score: 1333; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE6 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN
              130       140       150       160       170       180

        
pF1KE6 V
       :
NP_001 V
        

>>NP_780778 (OMIM: 300879) glycoprotein Xg isoform 1 pre  (180 aa)
 initn: 1028 init1: 705 opt: 1316  Z-score: 889.7  bits: 171.2 E(85289): 8.1e-43
Smith-Waterman score: 1316; 99.4% identity (99.4% similar) in 181 aa overlap (1-181:1-180)

               10        20        30        40        50        60
pF1KE6 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_780 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_780 SGGNIYPRPKPRPQPQPGNSGNSGG-YFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
               70        80         90       100       110         

              130       140       150       160       170       180
pF1KE6 SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_780 SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN
     120       130       140       150       160       170         

        
pF1KE6 V
       :
NP_780 V
     180

>>XP_005274644 (OMIM: 300879) PREDICTED: glycoprotein Xg  (196 aa)
 initn: 968 init1: 968 opt: 984  Z-score: 671.0  bits: 130.9 E(85289): 1.2e-30
Smith-Waterman score: 1293; 92.3% identity (92.3% similar) in 196 aa overlap (1-181:1-196)

               10        20        30        40        50        60
pF1KE6 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
               70        80        90       100       110       120

                             130       140       150       160     
pF1KE6 SDNTHG---------------GDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK
       ::::::               :::::::::::::::::::::::::::::::::::::::
XP_005 SDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK
              130       140       150       160       170       180

         170       180 
pF1KE6 LNNRRNCFRTHEPENV
       ::::::::::::::::
XP_005 LNNRRNCFRTHEPENV
              190      

>>NP_001135391 (OMIM: 300879) glycoprotein Xg isoform 2   (195 aa)
 initn: 792 init1: 684 opt: 967  Z-score: 659.9  bits: 128.8 E(85289): 5.1e-30
Smith-Waterman score: 1276; 91.8% identity (91.8% similar) in 196 aa overlap (1-181:1-195)

               10        20        30        40        50        60
pF1KE6 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 SGGNIYPRPKPRPQPQPGNSGNSGG-YFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
               70        80         90       100       110         

                             130       140       150       160     
pF1KE6 SDNTHG---------------GDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK
       ::::::               :::::::::::::::::::::::::::::::::::::::
NP_001 SDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK
     120       130       140       150       160       170         

         170       180 
pF1KE6 LNNRRNCFRTHEPENV
       ::::::::::::::::
NP_001 LNNRRNCFRTHEPENV
     180       190     

>>XP_011543877 (OMIM: 300879) PREDICTED: glycoprotein Xg  (130 aa)
 initn: 960 init1: 960 opt: 960  Z-score: 657.4  bits: 127.8 E(85289): 7e-30
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE6 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN
       :::::                                                       
XP_011 SDNTHEPENV                                                  
              130                                                  

>>XP_016885276 (OMIM: 300879) PREDICTED: glycoprotein Xg  (182 aa)
 initn: 706 init1: 706 opt: 722  Z-score: 499.2  bits: 99.0 E(85289): 4.6e-21
Smith-Waterman score: 1155; 85.2% identity (85.2% similar) in 196 aa overlap (1-181:1-182)

               10        20        30        40        50        60
pF1KE6 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
       ::::::::::::::::::::              ::::::::::::::::::::::::::
XP_016 MESWWGLPCLAFLCFLMHAR--------------EPTKKPNSDIYPKPKPPYYPQPENPD
               10        20                      30        40      

               70        80        90       100       110       120
pF1KE6 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
         50        60        70        80        90       100      

                             130       140       150       160     
pF1KE6 SDNTHG---------------GDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK
       ::::::               :::::::::::::::::::::::::::::::::::::::
XP_016 SDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK
        110       120       130       140       150       160      

         170       180 
pF1KE6 LNNRRNCFRTHEPENV
       ::::::::::::::::
XP_016 LNNRRNCFRTHEPENV
        170       180  




181 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:28:32 2016 done: Tue Nov  8 14:28:33 2016
 Total Scan time:  4.200 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]