FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6567, 181 aa
  1>>>pF1KE6567 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2925+/-0.000747; mu= 1.9892+/- 0.046
 mean_var=227.7682+/-45.925, 0's: 0 Z-trim(117.6): 5  B-trim: 75 in 1/54
 Lambda= 0.084982
 statistics sampled from 18416 (18419) to 18416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.849), E-opt: 0.2 (0.566), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS14120.1 XG gene_id:7499|Hs108|chrX             ( 180) 1316 172.5 1.3e-43
CCDS48073.1 XG gene_id:7499|Hs108|chrX             ( 195)  967 129.7   1e-30


>>CCDS14120.1 XG gene_id:7499|Hs108|chrX                  (180 aa)
 initn: 1028 init1: 705 opt: 1316  Z-score: 896.6  bits: 172.5 E(32554): 1.3e-43
Smith-Waterman score: 1316; 99.4% identity (99.4% similar) in 181 aa overlap (1-181:1-180)

               10        20        30        40        50        60
pF1KE6 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS14 SGGNIYPRPKPRPQPQPGNSGNSGG-YFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
               70        80         90       100       110         

              130       140       150       160       170       180
pF1KE6 SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN
     120       130       140       150       160       170         

        
pF1KE6 V
       :
CCDS14 V
     180

>>CCDS48073.1 XG gene_id:7499|Hs108|chrX                  (195 aa)
 initn: 792 init1: 684 opt: 967  Z-score: 664.9  bits: 129.7 E(32554): 1e-30
Smith-Waterman score: 1276; 91.8% identity (91.8% similar) in 196 aa overlap (1-181:1-195)

               10        20        30        40        50        60
pF1KE6 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS48 SGGNIYPRPKPRPQPQPGNSGNSGG-YFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
               70        80         90       100       110         

                             130       140       150       160     
pF1KE6 SDNTHG---------------GDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK
       ::::::               :::::::::::::::::::::::::::::::::::::::
CCDS48 SDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK
     120       130       140       150       160       170         

         170       180 
pF1KE6 LNNRRNCFRTHEPENV
       ::::::::::::::::
CCDS48 LNNRRNCFRTHEPENV
     180       190     




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:28:32 2016 done: Tue Nov  8 14:28:32 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]