FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6555, 154 aa
  1>>>pF1KE6555 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4293+/-0.00027; mu= 11.7203+/- 0.017
 mean_var=67.8421+/-13.715, 0's: 0 Z-trim(119.9): 13  B-trim: 47 in 1/54
 Lambda= 0.155713
 statistics sampled from 34500 (34513) to 34500 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.405), width:  16
 Scan time:  4.160

The best scores are:                                      opt bits E(85289)
NP_995580 (OMIM: 162340) neuromedin-B isoform 2 pr ( 154) 1014 235.7 2.3e-62
NP_066563 (OMIM: 162340) neuromedin-B isoform 1 pr ( 121)  715 168.5 3.1e-42
XP_016877728 (OMIM: 162340) PREDICTED: neuromedin- ( 145)  357 88.1 5.8e-18


>>NP_995580 (OMIM: 162340) neuromedin-B isoform 2 prepro  (154 aa)
 initn: 1014 init1: 1014 opt: 1014  Z-score: 1240.7  bits: 235.7 E(85289): 2.3e-62
Smith-Waterman score: 1014; 99.4% identity (99.4% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE6 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_995 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LEPSSPSPLGTATHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_995 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM
               70        80        90       100       110       120

              130       140       150    
pF1KE6 TPIMGQTQQRGLDCAHPGKVLNGTLLMAPSGCKS
       ::::::::::::::::::::::::::::::::::
NP_995 TPIMGQTQQRGLDCAHPGKVLNGTLLMAPSGCKS
              130       140       150    

>>NP_066563 (OMIM: 162340) neuromedin-B isoform 1 prepro  (121 aa)
 initn: 715 init1: 715 opt: 715  Z-score: 879.3  bits: 168.5 E(85289): 3.1e-42
Smith-Waterman score: 715; 99.1% identity (99.1% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KE6 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LEPSSPSPLGTATHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM
       :::::::::::: :::::::::::::::::::::::::::::::::::::          
NP_066 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQYRRLLVQILQ
               70        80        90       100       110       120

              130       140       150    
pF1KE6 TPIMGQTQQRGLDCAHPGKVLNGTLLMAPSGCKS
                                         
NP_066 K                                 
                                         

>>XP_016877728 (OMIM: 162340) PREDICTED: neuromedin-B is  (145 aa)
 initn: 354 init1: 354 opt: 357  Z-score: 443.4  bits: 88.1 E(85289): 5.8e-18
Smith-Waterman score: 360; 71.1% identity (74.4% similar) in 90 aa overlap (1-90:1-81)

               10        20        30        40        50        60
pF1KE6 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::     .:
XP_016 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATG----ASS
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE6 LEPSSPSPLGTATHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM
       :  : :     :    :  :  ::.. : :                              
XP_016 LSTSYP-----ALFRPLSKQPTQLAEFLPGPGPSHLPASCAILSTCSGKAEGAGFATTQT
         60             70        80        90       100       110 




154 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:22:29 2016 done: Tue Nov  8 14:22:30 2016
 Total Scan time:  4.160 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]