Result of FASTA (omim) for
pFN21AE6551
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6551, 132 aa
1>>>pF1KE6551 132 - 132 aa - 132 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5903+/-0.000249; mu= 11.5141+/- 0.016
mean_var=91.3963+/-18.081, 0's: 0 Z-trim(122.7): 12 B-trim: 66 in 1/51
Lambda= 0.134156
statistics sampled from 41250 (41266) to 41250 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.484), width: 16
Scan time: 4.880
The best scores are: opt bits E(85289)
XP_011527122 (OMIM: 600201,611742) PREDICTED: agou ( 132) 896 181.9 2.6e-46
NP_001663 (OMIM: 600201,611742) agouti-signaling p ( 132) 896 181.9 2.6e-46
XP_011527123 (OMIM: 600201,611742) PREDICTED: agou ( 132) 896 181.9 2.6e-46
XP_005260469 (OMIM: 600201,611742) PREDICTED: agou ( 136) 896 181.9 2.7e-46
NP_001129 (OMIM: 601665,602311) agouti-related pro ( 132) 178 42.9 0.00018
>>XP_011527122 (OMIM: 600201,611742) PREDICTED: agouti-s (132 aa)
initn: 896 init1: 896 opt: 896 Z-score: 952.3 bits: 181.9 E(85289): 2.6e-46
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR
70 80 90 100 110 120
130
pF1KE6 SACSCRVLSLNC
::::::::::::
XP_011 SACSCRVLSLNC
130
>>NP_001663 (OMIM: 600201,611742) agouti-signaling prote (132 aa)
initn: 896 init1: 896 opt: 896 Z-score: 952.3 bits: 181.9 E(85289): 2.6e-46
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR
70 80 90 100 110 120
130
pF1KE6 SACSCRVLSLNC
::::::::::::
NP_001 SACSCRVLSLNC
130
>>XP_011527123 (OMIM: 600201,611742) PREDICTED: agouti-s (132 aa)
initn: 896 init1: 896 opt: 896 Z-score: 952.3 bits: 181.9 E(85289): 2.6e-46
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRFFR
70 80 90 100 110 120
130
pF1KE6 SACSCRVLSLNC
::::::::::::
XP_011 SACSCRVLSLNC
130
>>XP_005260469 (OMIM: 600201,611742) PREDICTED: agouti-s (136 aa)
initn: 896 init1: 896 opt: 896 Z-score: 952.1 bits: 181.9 E(85289): 2.7e-46
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:5-136)
10 20 30 40 50
pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPPGMDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 KKSKQIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KKSKQIGRKAAEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQC
70 80 90 100 110 120
120 130
pF1KE6 RFFRSACSCRVLSLNC
::::::::::::::::
XP_005 RFFRSACSCRVLSLNC
130
>>NP_001129 (OMIM: 601665,602311) agouti-related protein (132 aa)
initn: 164 init1: 164 opt: 178 Z-score: 201.3 bits: 42.9 E(85289): 0.00018
Smith-Waterman score: 178; 32.0% identity (55.7% similar) in 122 aa overlap (9-128:10-122)
10 20 30 40 50
pF1KE6 MDVTRLLLATLLVFLCFFTANSHLPPEEKLRDDRSLRSNSSVNLLDVPSVSIVALNKKS
: ::.. :. : : : .: : .... : ..:.... : ::.
NP_001 MLTAAVLSCALLLALPATRGAQMGLAPMEGIR-----RPDQAL-LPELPGLGLRAPLKKT
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 KQIGRKAAEKKRSSKKEASMKKV-VRPRTPLSAP-CVATRNSCKPPAPACCDPCASCQCR
. ::. .. .: . . .. : : :. :: ..:: ::::::.: ::
NP_001 TA---EQAEEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCR
60 70 80 90 100 110
120 130
pF1KE6 FFRSACSCRVLSLNC
:: . : :: :
NP_001 FFNAFCYCRKLGTAMNPCSRT
120 130
132 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:20:34 2016 done: Tue Nov 8 14:20:34 2016
Total Scan time: 4.880 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]