Result of FASTA (omim) for
pFN21AE6543
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6543, 107 aa
1>>>pF1KE6543 107 - 107 aa - 107 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6121+/-0.000248; mu= 14.1428+/- 0.016
mean_var=58.3821+/-11.823, 0's: 0 Z-trim(122.2): 12 B-trim: 1208 in 1/54
Lambda= 0.167855
statistics sampled from 39888 (39900) to 39888 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.468), width: 16
Scan time: 3.340
The best scores are: opt bits E(85289)
XP_011527090 (OMIM: 139190) PREDICTED: somatoliber ( 107) 709 178.5 1.9e-45
NP_001171660 (OMIM: 139190) somatoliberin isoform ( 107) 709 178.5 1.9e-45
XP_011527086 (OMIM: 139190) PREDICTED: somatoliber ( 108) 697 175.6 1.4e-44
NP_066567 (OMIM: 139190) somatoliberin isoform 1 p ( 108) 697 175.6 1.4e-44
NP_003372 (OMIM: 192320) VIP peptides isoform 1 pr ( 170) 149 43.0 0.00018
NP_919416 (OMIM: 192320) VIP peptides isoform 2 pr ( 169) 148 42.8 0.00021
XP_006715625 (OMIM: 192320) PREDICTED: VIP peptide ( 169) 136 39.9 0.0016
XP_005267192 (OMIM: 192320) PREDICTED: VIP peptide ( 168) 135 39.6 0.0018
>>XP_011527090 (OMIM: 139190) PREDICTED: somatoliberin i (107 aa)
initn: 709 init1: 709 opt: 709 Z-score: 937.1 bits: 178.5 E(85289): 1.9e-45
Smith-Waterman score: 709; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
10 20 30 40 50 60
70 80 90 100
pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG
70 80 90 100
>>NP_001171660 (OMIM: 139190) somatoliberin isoform 2 pr (107 aa)
initn: 709 init1: 709 opt: 709 Z-score: 937.1 bits: 178.5 E(85289): 1.9e-45
Smith-Waterman score: 709; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
10 20 30 40 50 60
70 80 90 100
pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG
70 80 90 100
>>XP_011527086 (OMIM: 139190) PREDICTED: somatoliberin i (108 aa)
initn: 675 init1: 675 opt: 697 Z-score: 921.4 bits: 175.6 E(85289): 1.4e-44
Smith-Waterman score: 697; 99.1% identity (99.1% similar) in 108 aa overlap (1-107:1-108)
10 20 30 40 50 60
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
10 20 30 40 50 60
70 80 90 100
pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKH-RNSQG
:::::::::::::::::::::::::::::::::::::::::: :::::
XP_011 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHSRNSQG
70 80 90 100
>>NP_066567 (OMIM: 139190) somatoliberin isoform 1 prepr (108 aa)
initn: 675 init1: 675 opt: 697 Z-score: 921.4 bits: 175.6 E(85289): 1.4e-44
Smith-Waterman score: 697; 99.1% identity (99.1% similar) in 108 aa overlap (1-107:1-108)
10 20 30 40 50 60
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
10 20 30 40 50 60
70 80 90 100
pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKH-RNSQG
:::::::::::::::::::::::::::::::::::::::::: :::::
NP_066 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHSRNSQG
70 80 90 100
>>NP_003372 (OMIM: 192320) VIP peptides isoform 1 prepro (170 aa)
initn: 141 init1: 104 opt: 149 Z-score: 201.4 bits: 43.0 E(85289): 0.00018
Smith-Waterman score: 149; 31.8% identity (74.1% similar) in 85 aa overlap (28-107:77-159)
10 20 30 40 50
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDI
: :.::..::... :.::::::.: :...
NP_003 NEPDQVSLKEDIDMLQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESL
50 60 70 80 90 100
60 70 80 90 100
pF1KE6 MSRQQGESNQERGARARLGRQVDSMWAE-----QKQMELESILVALLQKHRNSQG
:... . . .: . .. :. :..... .::: ... : ..:. .:.:.:
NP_003 MGKRVSSNISEDPVPVK--RHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDF
110 120 130 140 150 160
NP_003 PEELEK
170
>>NP_919416 (OMIM: 192320) VIP peptides isoform 2 prepro (169 aa)
initn: 141 init1: 104 opt: 148 Z-score: 200.1 bits: 42.8 E(85289): 0.00021
Smith-Waterman score: 148; 32.9% identity (72.0% similar) in 82 aa overlap (28-107:77-158)
10 20 30 40 50
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDI
: :.::..::... :.::::::.: :...
NP_919 NEPDQVSLKEDIDMLQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESL
50 60 70 80 90 100
60 70 80 90 100
pF1KE6 MSRQQGESNQERGARARLGRQV--DSMWAEQKQMELESILVALLQKHRNSQG
:... .. ... : . : :.. .::: ... : ..:. .:.:.:
NP_919 MGKRVSNISEDPVPVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEE
110 120 130 140 150 160
NP_919 LEK
>>XP_006715625 (OMIM: 192320) PREDICTED: VIP peptides is (169 aa)
initn: 126 init1: 104 opt: 136 Z-score: 184.4 bits: 39.9 E(85289): 0.0016
Smith-Waterman score: 136; 31.8% identity (72.9% similar) in 85 aa overlap (28-107:77-158)
10 20 30 40 50
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDI
: :.::..::... :.::::::.: :...
XP_006 NEPDQVSLKEDIDMLQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESL
50 60 70 80 90 100
60 70 80 90 100
pF1KE6 MSRQQGESNQERGARARLGRQVDSMWAE-----QKQMELESILVALLQKHRNSQG
:... . . .: . .. :. :..... .::: ... : ..:. .: :.:
XP_006 MGKRVSSNISEDPVPVK--RHSDAVFTDNYTRLRKQMAVKKYLNSILNGKR-SEGESPDF
110 120 130 140 150 160
XP_006 PEELEK
>>XP_005267192 (OMIM: 192320) PREDICTED: VIP peptides is (168 aa)
initn: 126 init1: 104 opt: 135 Z-score: 183.2 bits: 39.6 E(85289): 0.0018
Smith-Waterman score: 135; 32.9% identity (70.7% similar) in 82 aa overlap (28-107:77-157)
10 20 30 40 50
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDI
: :.::..::... :.::::::.: :...
XP_005 NEPDQVSLKEDIDMLQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESL
50 60 70 80 90 100
60 70 80 90 100
pF1KE6 MSRQQGESNQERGARARLGRQV--DSMWAEQKQMELESILVALLQKHRNSQG
:... .. ... : . : :.. .::: ... : ..:. .: :.:
XP_005 MGKRVSNISEDPVPVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKR-SEGESPDFPEE
110 120 130 140 150 160
XP_005 LEK
107 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:16:06 2016 done: Tue Nov 8 14:16:07 2016
Total Scan time: 3.340 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]